miRNA display CGI


Results 1 - 20 of 37 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29759 5' -55 NC_006273.1 + 187332 1.06 0.006969
Target:  5'- gAGCUAAUGCCGUGCGACCCCGACAAAg -3'
miRNA:   3'- -UCGAUUACGGCACGCUGGGGCUGUUU- -5'
29759 5' -55 NC_006273.1 + 155774 0.78 0.414778
Target:  5'- uGCUGGUGCCGggugGCGAguaCCCCGugGAc -3'
miRNA:   3'- uCGAUUACGGCa---CGCU---GGGGCugUUu -5'
29759 5' -55 NC_006273.1 + 206568 0.77 0.46868
Target:  5'- aAGCcaguGUGCCGUGCGgcuaggGCCCCGGCGu- -3'
miRNA:   3'- -UCGau--UACGGCACGC------UGGGGCUGUuu -5'
29759 5' -55 NC_006273.1 + 40504 0.71 0.801761
Target:  5'- cGGCUGcUGCCGgacagGCGA-CCCGGCGc- -3'
miRNA:   3'- -UCGAUuACGGCa----CGCUgGGGCUGUuu -5'
29759 5' -55 NC_006273.1 + 128416 0.7 0.827639
Target:  5'- cGUUAA-GCUGUGCG-CCCCGGCc-- -3'
miRNA:   3'- uCGAUUaCGGCACGCuGGGGCUGuuu -5'
29759 5' -55 NC_006273.1 + 178570 0.7 0.844028
Target:  5'- uGGCUAAUGCCG-GCGGUCUgcaCGACGAc -3'
miRNA:   3'- -UCGAUUACGGCaCGCUGGG---GCUGUUu -5'
29759 5' -55 NC_006273.1 + 163460 0.7 0.851941
Target:  5'- cGGCUuGUGCCGUGUacGAUCaCCGGCu-- -3'
miRNA:   3'- -UCGAuUACGGCACG--CUGG-GGCUGuuu -5'
29759 5' -55 NC_006273.1 + 38079 0.7 0.851941
Target:  5'- cAGCaGccGCCGcGCGGCCUCGGCGGc -3'
miRNA:   3'- -UCGaUuaCGGCaCGCUGGGGCUGUUu -5'
29759 5' -55 NC_006273.1 + 232972 0.7 0.851941
Target:  5'- cAGCaGccGCCGcGCGGCCUCGGCGGc -3'
miRNA:   3'- -UCGaUuaCGGCaCGCUGGGGCUGUUu -5'
29759 5' -55 NC_006273.1 + 163840 0.69 0.859657
Target:  5'- cGCaAGUcGCCGgcaGCGGCCgCCGGCGAGg -3'
miRNA:   3'- uCGaUUA-CGGCa--CGCUGG-GGCUGUUU- -5'
29759 5' -55 NC_006273.1 + 216398 0.69 0.867171
Target:  5'- gGGCaguagGuCCGUGCGGCCCCaGGCGc- -3'
miRNA:   3'- -UCGauua-C-GGCACGCUGGGG-CUGUuu -5'
29759 5' -55 NC_006273.1 + 66759 0.69 0.867171
Target:  5'- cGCUGGUGC---GCGACCCgGGCAGc -3'
miRNA:   3'- uCGAUUACGgcaCGCUGGGgCUGUUu -5'
29759 5' -55 NC_006273.1 + 137481 0.69 0.874476
Target:  5'- uGGCUGAUGCCGaGUGuCgUCGACAu- -3'
miRNA:   3'- -UCGAUUACGGCaCGCuGgGGCUGUuu -5'
29759 5' -55 NC_006273.1 + 148659 0.69 0.881567
Target:  5'- cGGCUGagGUGCUcucgugGUGCGGCcugCCCGACAu- -3'
miRNA:   3'- -UCGAU--UACGG------CACGCUG---GGGCUGUuu -5'
29759 5' -55 NC_006273.1 + 136824 0.68 0.894434
Target:  5'- uGGCUucgGCCcgGUGCGacggaggGCCCCGACGu- -3'
miRNA:   3'- -UCGAuuaCGG--CACGC-------UGGGGCUGUuu -5'
29759 5' -55 NC_006273.1 + 147135 0.68 0.895089
Target:  5'- cGCUGGacGCCGagaacuuggauUGCGACCCCGAa--- -3'
miRNA:   3'- uCGAUUa-CGGC-----------ACGCUGGGGCUguuu -5'
29759 5' -55 NC_006273.1 + 101366 0.68 0.901512
Target:  5'- aGGCgGcgGCCGUGCGcaucGCCugccucauCCGACAGAg -3'
miRNA:   3'- -UCGaUuaCGGCACGC----UGG--------GGCUGUUU- -5'
29759 5' -55 NC_006273.1 + 189198 0.68 0.913666
Target:  5'- cGGCcGAUGCUGgucgGCGuuCCCGGCGu- -3'
miRNA:   3'- -UCGaUUACGGCa---CGCugGGGCUGUuu -5'
29759 5' -55 NC_006273.1 + 173810 0.68 0.913666
Target:  5'- uGGCcaaAcgGCCGcGCGACCcggCCGACGAGg -3'
miRNA:   3'- -UCGa--UuaCGGCaCGCUGG---GGCUGUUU- -5'
29759 5' -55 NC_006273.1 + 143946 0.67 0.935161
Target:  5'- cGCUAGcGCCgGUGgGGCCCgCGGCu-- -3'
miRNA:   3'- uCGAUUaCGG-CACgCUGGG-GCUGuuu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.