Results 21 - 37 of 37 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
29759 | 5' | -55 | NC_006273.1 | + | 101366 | 0.68 | 0.901512 |
Target: 5'- aGGCgGcgGCCGUGCGcaucGCCugccucauCCGACAGAg -3' miRNA: 3'- -UCGaUuaCGGCACGC----UGG--------GGCUGUUU- -5' |
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29759 | 5' | -55 | NC_006273.1 | + | 147135 | 0.68 | 0.895089 |
Target: 5'- cGCUGGacGCCGagaacuuggauUGCGACCCCGAa--- -3' miRNA: 3'- uCGAUUa-CGGC-----------ACGCUGGGGCUguuu -5' |
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29759 | 5' | -55 | NC_006273.1 | + | 136824 | 0.68 | 0.894434 |
Target: 5'- uGGCUucgGCCcgGUGCGacggaggGCCCCGACGu- -3' miRNA: 3'- -UCGAuuaCGG--CACGC-------UGGGGCUGUuu -5' |
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29759 | 5' | -55 | NC_006273.1 | + | 148659 | 0.69 | 0.881567 |
Target: 5'- cGGCUGagGUGCUcucgugGUGCGGCcugCCCGACAu- -3' miRNA: 3'- -UCGAU--UACGG------CACGCUG---GGGCUGUuu -5' |
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29759 | 5' | -55 | NC_006273.1 | + | 137481 | 0.69 | 0.874476 |
Target: 5'- uGGCUGAUGCCGaGUGuCgUCGACAu- -3' miRNA: 3'- -UCGAUUACGGCaCGCuGgGGCUGUuu -5' |
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29759 | 5' | -55 | NC_006273.1 | + | 66759 | 0.69 | 0.867171 |
Target: 5'- cGCUGGUGC---GCGACCCgGGCAGc -3' miRNA: 3'- uCGAUUACGgcaCGCUGGGgCUGUUu -5' |
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29759 | 5' | -55 | NC_006273.1 | + | 216398 | 0.69 | 0.867171 |
Target: 5'- gGGCaguagGuCCGUGCGGCCCCaGGCGc- -3' miRNA: 3'- -UCGauua-C-GGCACGCUGGGG-CUGUuu -5' |
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29759 | 5' | -55 | NC_006273.1 | + | 163840 | 0.69 | 0.859657 |
Target: 5'- cGCaAGUcGCCGgcaGCGGCCgCCGGCGAGg -3' miRNA: 3'- uCGaUUA-CGGCa--CGCUGG-GGCUGUUU- -5' |
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29759 | 5' | -55 | NC_006273.1 | + | 163460 | 0.7 | 0.851941 |
Target: 5'- cGGCUuGUGCCGUGUacGAUCaCCGGCu-- -3' miRNA: 3'- -UCGAuUACGGCACG--CUGG-GGCUGuuu -5' |
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29759 | 5' | -55 | NC_006273.1 | + | 232972 | 0.7 | 0.851941 |
Target: 5'- cAGCaGccGCCGcGCGGCCUCGGCGGc -3' miRNA: 3'- -UCGaUuaCGGCaCGCUGGGGCUGUUu -5' |
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29759 | 5' | -55 | NC_006273.1 | + | 38079 | 0.7 | 0.851941 |
Target: 5'- cAGCaGccGCCGcGCGGCCUCGGCGGc -3' miRNA: 3'- -UCGaUuaCGGCaCGCUGGGGCUGUUu -5' |
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29759 | 5' | -55 | NC_006273.1 | + | 178570 | 0.7 | 0.844028 |
Target: 5'- uGGCUAAUGCCG-GCGGUCUgcaCGACGAc -3' miRNA: 3'- -UCGAUUACGGCaCGCUGGG---GCUGUUu -5' |
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29759 | 5' | -55 | NC_006273.1 | + | 128416 | 0.7 | 0.827639 |
Target: 5'- cGUUAA-GCUGUGCG-CCCCGGCc-- -3' miRNA: 3'- uCGAUUaCGGCACGCuGGGGCUGuuu -5' |
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29759 | 5' | -55 | NC_006273.1 | + | 40504 | 0.71 | 0.801761 |
Target: 5'- cGGCUGcUGCCGgacagGCGA-CCCGGCGc- -3' miRNA: 3'- -UCGAUuACGGCa----CGCUgGGGCUGUuu -5' |
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29759 | 5' | -55 | NC_006273.1 | + | 206568 | 0.77 | 0.46868 |
Target: 5'- aAGCcaguGUGCCGUGCGgcuaggGCCCCGGCGu- -3' miRNA: 3'- -UCGau--UACGGCACGC------UGGGGCUGUuu -5' |
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29759 | 5' | -55 | NC_006273.1 | + | 155774 | 0.78 | 0.414778 |
Target: 5'- uGCUGGUGCCGggugGCGAguaCCCCGugGAc -3' miRNA: 3'- uCGAUUACGGCa---CGCU---GGGGCugUUu -5' |
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29759 | 5' | -55 | NC_006273.1 | + | 187332 | 1.06 | 0.006969 |
Target: 5'- gAGCUAAUGCCGUGCGACCCCGACAAAg -3' miRNA: 3'- -UCGAUUACGGCACGCUGGGGCUGUUU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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