Results 21 - 37 of 37 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29759 | 5' | -55 | NC_006273.1 | + | 130866 | 0.67 | 0.939946 |
Target: 5'- aAGCUGucacUGCCGcGCGACCCgGcCGc- -3' miRNA: 3'- -UCGAUu---ACGGCaCGCUGGGgCuGUuu -5' |
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29759 | 5' | -55 | NC_006273.1 | + | 128416 | 0.7 | 0.827639 |
Target: 5'- cGUUAA-GCUGUGCG-CCCCGGCc-- -3' miRNA: 3'- uCGAUUaCGGCACGCuGGGGCUGuuu -5' |
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29759 | 5' | -55 | NC_006273.1 | + | 123271 | 0.67 | 0.944497 |
Target: 5'- cGGCUGGUGaguCCacGCGGCCCCGAgAu- -3' miRNA: 3'- -UCGAUUAC---GGcaCGCUGGGGCUgUuu -5' |
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29759 | 5' | -55 | NC_006273.1 | + | 105494 | 0.67 | 0.944497 |
Target: 5'- cGUcGGUGCaCGUagagcaGCGGCCCgCGACAAAa -3' miRNA: 3'- uCGaUUACG-GCA------CGCUGGG-GCUGUUU- -5' |
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29759 | 5' | -55 | NC_006273.1 | + | 101366 | 0.68 | 0.901512 |
Target: 5'- aGGCgGcgGCCGUGCGcaucGCCugccucauCCGACAGAg -3' miRNA: 3'- -UCGaUuaCGGCACGC----UGG--------GGCUGUUU- -5' |
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29759 | 5' | -55 | NC_006273.1 | + | 71081 | 0.67 | 0.948816 |
Target: 5'- uGUUcAUGCUGUGgGGCgCCGACGc- -3' miRNA: 3'- uCGAuUACGGCACgCUGgGGCUGUuu -5' |
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29759 | 5' | -55 | NC_006273.1 | + | 66759 | 0.69 | 0.867171 |
Target: 5'- cGCUGGUGC---GCGACCCgGGCAGc -3' miRNA: 3'- uCGAUUACGgcaCGCUGGGgCUGUUu -5' |
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29759 | 5' | -55 | NC_006273.1 | + | 65419 | 0.66 | 0.952907 |
Target: 5'- cGCaccUGCCGUGuCGACgCCGACc-- -3' miRNA: 3'- uCGauuACGGCAC-GCUGgGGCUGuuu -5' |
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29759 | 5' | -55 | NC_006273.1 | + | 56809 | 0.65 | 0.970055 |
Target: 5'- gGGCcgucGUCGUGCaGACCgCCGGCAu- -3' miRNA: 3'- -UCGauuaCGGCACG-CUGG-GGCUGUuu -5' |
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29759 | 5' | -55 | NC_006273.1 | + | 48580 | 0.66 | 0.96705 |
Target: 5'- gGGCggcAUGCCGUugGCGGCgCCGGgAAu -3' miRNA: 3'- -UCGau-UACGGCA--CGCUGgGGCUgUUu -5' |
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29759 | 5' | -55 | NC_006273.1 | + | 40504 | 0.71 | 0.801761 |
Target: 5'- cGGCUGcUGCCGgacagGCGA-CCCGGCGc- -3' miRNA: 3'- -UCGAUuACGGCa----CGCUgGGGCUGUuu -5' |
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29759 | 5' | -55 | NC_006273.1 | + | 38601 | 0.67 | 0.944497 |
Target: 5'- cGcCUGcgGCUGUGCcgccacaugGACCCCGAgCAGGa -3' miRNA: 3'- uC-GAUuaCGGCACG---------CUGGGGCU-GUUU- -5' |
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29759 | 5' | -55 | NC_006273.1 | + | 38334 | 0.66 | 0.960413 |
Target: 5'- cGCUGccgccGCCGUcGCGuccGCCCCGACc-- -3' miRNA: 3'- uCGAUua---CGGCA-CGC---UGGGGCUGuuu -5' |
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29759 | 5' | -55 | NC_006273.1 | + | 38079 | 0.7 | 0.851941 |
Target: 5'- cAGCaGccGCCGcGCGGCCUCGGCGGc -3' miRNA: 3'- -UCGaUuaCGGCaCGCUGGGGCUGUUu -5' |
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29759 | 5' | -55 | NC_006273.1 | + | 22005 | 0.66 | 0.96705 |
Target: 5'- gGGCUGcugGCCGcgggaucgGUGGCCCUGACc-- -3' miRNA: 3'- -UCGAUua-CGGCa-------CGCUGGGGCUGuuu -5' |
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29759 | 5' | -55 | NC_006273.1 | + | 18414 | 0.66 | 0.966739 |
Target: 5'- cGCUGcgGCCGUGgccaagaCGGCCCgCGAa--- -3' miRNA: 3'- uCGAUuaCGGCAC-------GCUGGG-GCUguuu -5' |
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29759 | 5' | -55 | NC_006273.1 | + | 1671 | 0.65 | 0.970055 |
Target: 5'- uGCUGccucaGCCG-GCG-CUCCGACAGAc -3' miRNA: 3'- uCGAUua---CGGCaCGCuGGGGCUGUUU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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