miRNA display CGI


Results 1 - 20 of 37 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29759 5' -55 NC_006273.1 + 206568 0.77 0.46868
Target:  5'- aAGCcaguGUGCCGUGCGgcuaggGCCCCGGCGu- -3'
miRNA:   3'- -UCGau--UACGGCACGC------UGGGGCUGUuu -5'
29759 5' -55 NC_006273.1 + 56809 0.65 0.970055
Target:  5'- gGGCcgucGUCGUGCaGACCgCCGGCAu- -3'
miRNA:   3'- -UCGauuaCGGCACG-CUGG-GGCUGUuu -5'
29759 5' -55 NC_006273.1 + 196564 0.65 0.970055
Target:  5'- uGCUGccucaGCCG-GCG-CUCCGACAGAc -3'
miRNA:   3'- uCGAUua---CGGCaCGCuGGGGCUGUUU- -5'
29759 5' -55 NC_006273.1 + 48580 0.66 0.96705
Target:  5'- gGGCggcAUGCCGUugGCGGCgCCGGgAAu -3'
miRNA:   3'- -UCGau-UACGGCA--CGCUGgGGCUgUUu -5'
29759 5' -55 NC_006273.1 + 22005 0.66 0.96705
Target:  5'- gGGCUGcugGCCGcgggaucgGUGGCCCUGACc-- -3'
miRNA:   3'- -UCGAUua-CGGCa-------CGCUGGGGCUGuuu -5'
29759 5' -55 NC_006273.1 + 233227 0.66 0.960413
Target:  5'- cGCUGccgccGCCGUcGCGuccGCCCCGACc-- -3'
miRNA:   3'- uCGAUua---CGGCA-CGC---UGGGGCUGuuu -5'
29759 5' -55 NC_006273.1 + 123271 0.67 0.944497
Target:  5'- cGGCUGGUGaguCCacGCGGCCCCGAgAu- -3'
miRNA:   3'- -UCGAUUAC---GGcaCGCUGGGGCUgUuu -5'
29759 5' -55 NC_006273.1 + 38601 0.67 0.944497
Target:  5'- cGcCUGcgGCUGUGCcgccacaugGACCCCGAgCAGGa -3'
miRNA:   3'- uC-GAUuaCGGCACG---------CUGGGGCU-GUUU- -5'
29759 5' -55 NC_006273.1 + 130866 0.67 0.939946
Target:  5'- aAGCUGucacUGCCGcGCGACCCgGcCGc- -3'
miRNA:   3'- -UCGAUu---ACGGCaCGCUGGGgCuGUuu -5'
29759 5' -55 NC_006273.1 + 189198 0.68 0.913666
Target:  5'- cGGCcGAUGCUGgucgGCGuuCCCGGCGu- -3'
miRNA:   3'- -UCGaUUACGGCa---CGCugGGGCUGUuu -5'
29759 5' -55 NC_006273.1 + 40504 0.71 0.801761
Target:  5'- cGGCUGcUGCCGgacagGCGA-CCCGGCGc- -3'
miRNA:   3'- -UCGAUuACGGCa----CGCUgGGGCUGUuu -5'
29759 5' -55 NC_006273.1 + 128416 0.7 0.827639
Target:  5'- cGUUAA-GCUGUGCG-CCCCGGCc-- -3'
miRNA:   3'- uCGAUUaCGGCACGCuGGGGCUGuuu -5'
29759 5' -55 NC_006273.1 + 232972 0.7 0.851941
Target:  5'- cAGCaGccGCCGcGCGGCCUCGGCGGc -3'
miRNA:   3'- -UCGaUuaCGGCaCGCUGGGGCUGUUu -5'
29759 5' -55 NC_006273.1 + 163840 0.69 0.859657
Target:  5'- cGCaAGUcGCCGgcaGCGGCCgCCGGCGAGg -3'
miRNA:   3'- uCGaUUA-CGGCa--CGCUGG-GGCUGUUU- -5'
29759 5' -55 NC_006273.1 + 216398 0.69 0.867171
Target:  5'- gGGCaguagGuCCGUGCGGCCCCaGGCGc- -3'
miRNA:   3'- -UCGauua-C-GGCACGCUGGGG-CUGUuu -5'
29759 5' -55 NC_006273.1 + 66759 0.69 0.867171
Target:  5'- cGCUGGUGC---GCGACCCgGGCAGc -3'
miRNA:   3'- uCGAUUACGgcaCGCUGGGgCUGUUu -5'
29759 5' -55 NC_006273.1 + 148659 0.69 0.881567
Target:  5'- cGGCUGagGUGCUcucgugGUGCGGCcugCCCGACAu- -3'
miRNA:   3'- -UCGAU--UACGG------CACGCUG---GGGCUGUuu -5'
29759 5' -55 NC_006273.1 + 1671 0.65 0.970055
Target:  5'- uGCUGccucaGCCG-GCG-CUCCGACAGAc -3'
miRNA:   3'- uCGAUua---CGGCaCGCuGGGGCUGUUU- -5'
29759 5' -55 NC_006273.1 + 155774 0.78 0.414778
Target:  5'- uGCUGGUGCCGggugGCGAguaCCCCGugGAc -3'
miRNA:   3'- uCGAUUACGGCa---CGCU---GGGGCugUUu -5'
29759 5' -55 NC_006273.1 + 178570 0.7 0.844028
Target:  5'- uGGCUAAUGCCG-GCGGUCUgcaCGACGAc -3'
miRNA:   3'- -UCGAUUACGGCaCGCUGGG---GCUGUUu -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.