miRNA display CGI


Results 1 - 20 of 22 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29761 5' -54.2 NC_006273.1 + 18518 0.66 0.974891
Target:  5'- -uCGAgGGCCUGCGCGcCUGCc---- -3'
miRNA:   3'- auGCUaCUGGACGCGCuGACGuagau -5'
29761 5' -54.2 NC_006273.1 + 124441 0.66 0.974891
Target:  5'- cGCGcgGGCgUGCGCGGCUcGCcgacgCUGc -3'
miRNA:   3'- aUGCuaCUGgACGCGCUGA-CGua---GAU- -5'
29761 5' -54.2 NC_006273.1 + 123573 0.66 0.974891
Target:  5'- cACGAUGGCCaUGCGCGucagUUGUugGUCa- -3'
miRNA:   3'- aUGCUACUGG-ACGCGCu---GACG--UAGau -5'
29761 5' -54.2 NC_006273.1 + 189022 0.66 0.97221
Target:  5'- -uCGggGGCCUGUGCGACgacaGCcgCg- -3'
miRNA:   3'- auGCuaCUGGACGCGCUGa---CGuaGau -5'
29761 5' -54.2 NC_006273.1 + 103861 0.66 0.969329
Target:  5'- cGCGuUGAUCUGCGUGuccacCUGC-UCUAg -3'
miRNA:   3'- aUGCuACUGGACGCGCu----GACGuAGAU- -5'
29761 5' -54.2 NC_006273.1 + 187417 0.66 0.96294
Target:  5'- gACGAUGaACCcGCGCGGCg--GUCUGu -3'
miRNA:   3'- aUGCUAC-UGGaCGCGCUGacgUAGAU- -5'
29761 5' -54.2 NC_006273.1 + 133243 0.67 0.951706
Target:  5'- gUACGGUGGCgacgGCGCcACUGCcgCUGc -3'
miRNA:   3'- -AUGCUACUGga--CGCGcUGACGuaGAU- -5'
29761 5' -54.2 NC_006273.1 + 150961 0.67 0.951706
Target:  5'- -cCGAgagccucACCUGCGUGACgGCGUCUu -3'
miRNA:   3'- auGCUac-----UGGACGCGCUGaCGUAGAu -5'
29761 5' -54.2 NC_006273.1 + 105106 0.68 0.938393
Target:  5'- -uCGA-GGCCgGCGCGGCUGCGa--- -3'
miRNA:   3'- auGCUaCUGGaCGCGCUGACGUagau -5'
29761 5' -54.2 NC_006273.1 + 181630 0.68 0.922931
Target:  5'- gACGGUGACgUGCGCGGC-GUAa--- -3'
miRNA:   3'- aUGCUACUGgACGCGCUGaCGUagau -5'
29761 5' -54.2 NC_006273.1 + 104683 0.68 0.917296
Target:  5'- aGCGAggacgugGAgCUGCGCGAgCUGCAggcguuUCUGg -3'
miRNA:   3'- aUGCUa------CUgGACGCGCU-GACGU------AGAU- -5'
29761 5' -54.2 NC_006273.1 + 89596 0.68 0.917296
Target:  5'- --gGGUGGCCUcGCgGUGGCUGCcgCUAc -3'
miRNA:   3'- augCUACUGGA-CG-CGCUGACGuaGAU- -5'
29761 5' -54.2 NC_006273.1 + 93618 0.68 0.917296
Target:  5'- aGCGgcGGCCUGCGCaGCUucgcGCAUCc- -3'
miRNA:   3'- aUGCuaCUGGACGCGcUGA----CGUAGau -5'
29761 5' -54.2 NC_006273.1 + 45982 0.69 0.911421
Target:  5'- -gUGGUG-CCUGCGCGuGCUGCuAUCg- -3'
miRNA:   3'- auGCUACuGGACGCGC-UGACG-UAGau -5'
29761 5' -54.2 NC_006273.1 + 204122 0.69 0.911421
Target:  5'- aACGGcucugguuguUGACCUGCGCGGCUacccgGCGUa-- -3'
miRNA:   3'- aUGCU----------ACUGGACGCGCUGA-----CGUAgau -5'
29761 5' -54.2 NC_006273.1 + 188035 0.69 0.892376
Target:  5'- cACGuUGGCCUcGUGCaGCUGCGUCa- -3'
miRNA:   3'- aUGCuACUGGA-CGCGcUGACGUAGau -5'
29761 5' -54.2 NC_006273.1 + 71652 0.69 0.885564
Target:  5'- gACGAUGcgGCCUGcCGcCGGCUGUuUCUAc -3'
miRNA:   3'- aUGCUAC--UGGAC-GC-GCUGACGuAGAU- -5'
29761 5' -54.2 NC_006273.1 + 69247 0.69 0.885564
Target:  5'- cGCGcUGAUCaUGCGCGACcgccUGCGUCg- -3'
miRNA:   3'- aUGCuACUGG-ACGCGCUG----ACGUAGau -5'
29761 5' -54.2 NC_006273.1 + 169201 0.7 0.863792
Target:  5'- -uCGAUGACCUGCGUcagacGCUGaaaGUCUAc -3'
miRNA:   3'- auGCUACUGGACGCGc----UGACg--UAGAU- -5'
29761 5' -54.2 NC_006273.1 + 93585 0.71 0.823394
Target:  5'- gGCGgcGGCCUGCGCGGcCUGUAc--- -3'
miRNA:   3'- aUGCuaCUGGACGCGCU-GACGUagau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.