miRNA display CGI


Results 1 - 20 of 214 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29768 5' -63.2 NC_006273.1 + 165251 0.65 0.728207
Target:  5'- gAGCCAUCGccgcacucgcuguaGCCGCgcaUCACCGUcAUCCa -3'
miRNA:   3'- -UCGGUAGC--------------CGGCG---GGUGGCGaUGGGc -5'
29768 5' -63.2 NC_006273.1 + 41411 0.66 0.725465
Target:  5'- cGCCGUCGGa-GCCCagggcgaguuACCGUugaccgggguuugggUACCCGc -3'
miRNA:   3'- uCGGUAGCCggCGGG----------UGGCG---------------AUGGGC- -5'
29768 5' -63.2 NC_006273.1 + 99942 0.66 0.7218
Target:  5'- gAGCCcUCGaGCguggagacgagCGCgCAgCCGCUGCCCa -3'
miRNA:   3'- -UCGGuAGC-CG-----------GCGgGU-GGCGAUGGGc -5'
29768 5' -63.2 NC_006273.1 + 114772 0.66 0.7218
Target:  5'- aAGgCGUaUGGCaGCCCGCUGCgcaACCCa -3'
miRNA:   3'- -UCgGUA-GCCGgCGGGUGGCGa--UGGGc -5'
29768 5' -63.2 NC_006273.1 + 92056 0.66 0.7218
Target:  5'- cAGCCGcaugaGGCaaaaGCCCAgcaCGUUACCCa -3'
miRNA:   3'- -UCGGUag---CCGg---CGGGUg--GCGAUGGGc -5'
29768 5' -63.2 NC_006273.1 + 135182 0.66 0.7218
Target:  5'- cGCCAUgGGUa-CCUACCGCUGCg-- -3'
miRNA:   3'- uCGGUAgCCGgcGGGUGGCGAUGggc -5'
29768 5' -63.2 NC_006273.1 + 140405 0.66 0.7218
Target:  5'- gAGCCcaacCGgaGCCGCcgagagggagCCGCCGCgagACCCGg -3'
miRNA:   3'- -UCGGua--GC--CGGCG----------GGUGGCGa--UGGGC- -5'
29768 5' -63.2 NC_006273.1 + 94209 0.66 0.7218
Target:  5'- -aCC--CGGCgUGCCCGCCGCccCCCGg -3'
miRNA:   3'- ucGGuaGCCG-GCGGGUGGCGauGGGC- -5'
29768 5' -63.2 NC_006273.1 + 164580 0.66 0.7218
Target:  5'- aGGCCA--GGCCGCUgG-CGCUGCCg- -3'
miRNA:   3'- -UCGGUagCCGGCGGgUgGCGAUGGgc -5'
29768 5' -63.2 NC_006273.1 + 170868 0.66 0.7218
Target:  5'- aAG-CAUCGGCCGUgCGCUGC-GCCa- -3'
miRNA:   3'- -UCgGUAGCCGGCGgGUGGCGaUGGgc -5'
29768 5' -63.2 NC_006273.1 + 151204 0.66 0.7218
Target:  5'- gGGCCuccauuucgaaAUCGGCCgacacgcucuggGCCgCGCCGCUcCUCGu -3'
miRNA:   3'- -UCGG-----------UAGCCGG------------CGG-GUGGCGAuGGGC- -5'
29768 5' -63.2 NC_006273.1 + 37608 0.66 0.7218
Target:  5'- cGUCggGUCGGCUGUCC-CCGaggACCCa -3'
miRNA:   3'- uCGG--UAGCCGGCGGGuGGCga-UGGGc -5'
29768 5' -63.2 NC_006273.1 + 155152 0.66 0.720882
Target:  5'- uGCCGagGGCCGCgCCcagguagGCCGUUACUg- -3'
miRNA:   3'- uCGGUagCCGGCG-GG-------UGGCGAUGGgc -5'
29768 5' -63.2 NC_006273.1 + 124153 0.66 0.719043
Target:  5'- cGCUguGUCGGCUGCuauugcugccaacgCCACCGCcGCCg- -3'
miRNA:   3'- uCGG--UAGCCGGCG--------------GGUGGCGaUGGgc -5'
29768 5' -63.2 NC_006273.1 + 173729 0.66 0.71259
Target:  5'- uGUCcgUGGCCcguGCCCGCaGCUGCUCu -3'
miRNA:   3'- uCGGuaGCCGG---CGGGUGgCGAUGGGc -5'
29768 5' -63.2 NC_006273.1 + 13364 0.66 0.71259
Target:  5'- gAGUCuUCGGCCauGCUaaaCGCUACCCu -3'
miRNA:   3'- -UCGGuAGCCGG--CGGgugGCGAUGGGc -5'
29768 5' -63.2 NC_006273.1 + 24323 0.66 0.71259
Target:  5'- uGUCAUgGGUCugcgcuuuCCCACCGCgACCCa -3'
miRNA:   3'- uCGGUAgCCGGc-------GGGUGGCGaUGGGc -5'
29768 5' -63.2 NC_006273.1 + 158771 0.66 0.71259
Target:  5'- cGCCGUCGacGCCGCUCagGCCGUgauagUCCGa -3'
miRNA:   3'- uCGGUAGC--CGGCGGG--UGGCGau---GGGC- -5'
29768 5' -63.2 NC_006273.1 + 117210 0.66 0.71259
Target:  5'- cAGCCGcagUCaGGCCGCCaCGCCgGCgGCUgGg -3'
miRNA:   3'- -UCGGU---AG-CCGGCGG-GUGG-CGaUGGgC- -5'
29768 5' -63.2 NC_006273.1 + 190879 0.66 0.71259
Target:  5'- cGCCGaCGuGCgCGCgugugucucaCCGCCGCUcGCCCGu -3'
miRNA:   3'- uCGGUaGC-CG-GCG----------GGUGGCGA-UGGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.