miRNA display CGI


Results 1 - 20 of 214 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29768 5' -63.2 NC_006273.1 + 165251 0.65 0.728207
Target:  5'- gAGCCAUCGccgcacucgcuguaGCCGCgcaUCACCGUcAUCCa -3'
miRNA:   3'- -UCGGUAGC--------------CGGCG---GGUGGCGaUGGGc -5'
29768 5' -63.2 NC_006273.1 + 163847 0.66 0.694001
Target:  5'- cGCCGgcagCGGCCGCCgGCgaggGCCCu -3'
miRNA:   3'- uCGGUa---GCCGGCGGgUGgcgaUGGGc -5'
29768 5' -63.2 NC_006273.1 + 99942 0.66 0.7218
Target:  5'- gAGCCcUCGaGCguggagacgagCGCgCAgCCGCUGCCCa -3'
miRNA:   3'- -UCGGuAGC-CG-----------GCGgGU-GGCGAUGGGc -5'
29768 5' -63.2 NC_006273.1 + 43038 0.66 0.71259
Target:  5'- cGCCA-CGGCCGCgCAaCGC-ACCuCGa -3'
miRNA:   3'- uCGGUaGCCGGCGgGUgGCGaUGG-GC- -5'
29768 5' -63.2 NC_006273.1 + 221320 0.66 0.675235
Target:  5'- cAGCCc-CGGCCGCCgAuaGUUACCgGa -3'
miRNA:   3'- -UCGGuaGCCGGCGGgUggCGAUGGgC- -5'
29768 5' -63.2 NC_006273.1 + 40554 0.66 0.684636
Target:  5'- gGGCgGUCGaCCuaCCACCGcCUugCCGc -3'
miRNA:   3'- -UCGgUAGCcGGcgGGUGGC-GAugGGC- -5'
29768 5' -63.2 NC_006273.1 + 119883 0.66 0.684636
Target:  5'- cGGCCGauuuUCuucGCCGCCgCGCCGCUgGCUCu -3'
miRNA:   3'- -UCGGU----AGc--CGGCGG-GUGGCGA-UGGGc -5'
29768 5' -63.2 NC_006273.1 + 221807 0.66 0.694001
Target:  5'- cGGCCcg-GGCCGCCCGgCGggugagcACCCGg -3'
miRNA:   3'- -UCGGuagCCGGCGGGUgGCga-----UGGGC- -5'
29768 5' -63.2 NC_006273.1 + 73149 0.66 0.684636
Target:  5'- cGCCggUGGCUGCgacguuucuaCCGCCGCUuccUCCGg -3'
miRNA:   3'- uCGGuaGCCGGCG----------GGUGGCGAu--GGGC- -5'
29768 5' -63.2 NC_006273.1 + 200718 0.66 0.694001
Target:  5'- cGCUGcUCGGCucCGCUCACCGCU-CCgGu -3'
miRNA:   3'- uCGGU-AGCCG--GCGGGUGGCGAuGGgC- -5'
29768 5' -63.2 NC_006273.1 + 232932 0.66 0.675235
Target:  5'- -cCCAgcgCGGCCGCucCCACUGCUcgcgguccaGCUCGg -3'
miRNA:   3'- ucGGUa--GCCGGCG--GGUGGCGA---------UGGGC- -5'
29768 5' -63.2 NC_006273.1 + 13364 0.66 0.71259
Target:  5'- gAGUCuUCGGCCauGCUaaaCGCUACCCu -3'
miRNA:   3'- -UCGGuAGCCGG--CGGgugGCGAUGGGc -5'
29768 5' -63.2 NC_006273.1 + 69692 0.66 0.703321
Target:  5'- gAGCUGaCGGCCGCCgAUCGCguagGCagCGg -3'
miRNA:   3'- -UCGGUaGCCGGCGGgUGGCGa---UGg-GC- -5'
29768 5' -63.2 NC_006273.1 + 117210 0.66 0.71259
Target:  5'- cAGCCGcagUCaGGCCGCCaCGCCgGCgGCUgGg -3'
miRNA:   3'- -UCGGU---AG-CCGGCGG-GUGG-CGaUGGgC- -5'
29768 5' -63.2 NC_006273.1 + 194521 0.66 0.703321
Target:  5'- cGCCGUC-GCCGCCCcgaaaagcgaAgCGCUGCgCa -3'
miRNA:   3'- uCGGUAGcCGGCGGG----------UgGCGAUGgGc -5'
29768 5' -63.2 NC_006273.1 + 190879 0.66 0.71259
Target:  5'- cGCCGaCGuGCgCGCgugugucucaCCGCCGCUcGCCCGu -3'
miRNA:   3'- uCGGUaGC-CG-GCG----------GGUGGCGA-UGGGC- -5'
29768 5' -63.2 NC_006273.1 + 77154 0.66 0.703321
Target:  5'- cGCCGUC-GCCgGCCgACgCGC-GCCCGc -3'
miRNA:   3'- uCGGUAGcCGG-CGGgUG-GCGaUGGGC- -5'
29768 5' -63.2 NC_006273.1 + 124153 0.66 0.719043
Target:  5'- cGCUguGUCGGCUGCuauugcugccaacgCCACCGCcGCCg- -3'
miRNA:   3'- uCGG--UAGCCGGCG--------------GGUGGCGaUGGgc -5'
29768 5' -63.2 NC_006273.1 + 37105 0.66 0.694001
Target:  5'- gAGCCcUCGaagcGCCGCaaguaaCGCCGCagGCCCu -3'
miRNA:   3'- -UCGGuAGC----CGGCGg-----GUGGCGa-UGGGc -5'
29768 5' -63.2 NC_006273.1 + 227108 0.66 0.684636
Target:  5'- cGCCcaCGGCgGCguggguaugCGCCGCUGCCCu -3'
miRNA:   3'- uCGGuaGCCGgCGg--------GUGGCGAUGGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.