Results 81 - 100 of 214 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
29768 | 5' | -63.2 | NC_006273.1 | + | 173787 | 0.67 | 0.653506 |
Target: 5'- cGCCAUcauggacgcgcgcgCGGUgGCCaaacgGCCGCgcgACCCGg -3' miRNA: 3'- uCGGUA--------------GCCGgCGGg----UGGCGa--UGGGC- -5' |
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29768 | 5' | -63.2 | NC_006273.1 | + | 162198 | 0.67 | 0.656347 |
Target: 5'- uGGUgAUCGGCCGCggugCGCUGCaGCCgGa -3' miRNA: 3'- -UCGgUAGCCGGCGg---GUGGCGaUGGgC- -5' |
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29768 | 5' | -63.2 | NC_006273.1 | + | 84605 | 0.67 | 0.665802 |
Target: 5'- aAGCU-UCGGCCGgCUGCUGCaccacagcGCCCGg -3' miRNA: 3'- -UCGGuAGCCGGCgGGUGGCGa-------UGGGC- -5' |
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29768 | 5' | -63.2 | NC_006273.1 | + | 30727 | 0.67 | 0.665802 |
Target: 5'- aAGUC-UCGcGaCCGCCUAgugugcccUCGCUGCCCGa -3' miRNA: 3'- -UCGGuAGC-C-GGCGGGU--------GGCGAUGGGC- -5' |
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29768 | 5' | -63.2 | NC_006273.1 | + | 216048 | 0.67 | 0.665802 |
Target: 5'- gAGuCCAUC-GCUucagGCCCACCGCUcguuCCCu -3' miRNA: 3'- -UC-GGUAGcCGG----CGGGUGGCGAu---GGGc -5' |
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29768 | 5' | -63.2 | NC_006273.1 | + | 191461 | 0.67 | 0.660131 |
Target: 5'- uGGUCGUUGGCCugaugguggaagucgGCgCCGCCGCcGCuuGg -3' miRNA: 3'- -UCGGUAGCCGG---------------CG-GGUGGCGaUGggC- -5' |
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29768 | 5' | -63.2 | NC_006273.1 | + | 158760 | 0.67 | 0.656347 |
Target: 5'- aAGaCAagaGGCCGCCgGCCGCgGCCaCGg -3' miRNA: 3'- -UCgGUag-CCGGCGGgUGGCGaUGG-GC- -5' |
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29768 | 5' | -63.2 | NC_006273.1 | + | 154997 | 0.67 | 0.656347 |
Target: 5'- cGCCG-CuGCCGCcgccacggCCGCCGCU-CCCGc -3' miRNA: 3'- uCGGUaGcCGGCG--------GGUGGCGAuGGGC- -5' |
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29768 | 5' | -63.2 | NC_006273.1 | + | 40488 | 0.67 | 0.656347 |
Target: 5'- cGUgGUCgaGGCgGCCCgGCUGCUGCCgGa -3' miRNA: 3'- uCGgUAG--CCGgCGGG-UGGCGAUGGgC- -5' |
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29768 | 5' | -63.2 | NC_006273.1 | + | 38395 | 0.67 | 0.656347 |
Target: 5'- cGCCGUCcGUCG-CCGCCGCUGCg-- -3' miRNA: 3'- uCGGUAGcCGGCgGGUGGCGAUGggc -5' |
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29768 | 5' | -63.2 | NC_006273.1 | + | 34104 | 0.67 | 0.656347 |
Target: 5'- cGCCGUCGuCgCGCCCgucGCCGC-ACUCGc -3' miRNA: 3'- uCGGUAGCcG-GCGGG---UGGCGaUGGGC- -5' |
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29768 | 5' | -63.2 | NC_006273.1 | + | 35076 | 0.67 | 0.618424 |
Target: 5'- cGCCccCGuGCCGCUCA-CGCUAUCCa -3' miRNA: 3'- uCGGuaGC-CGGCGGGUgGCGAUGGGc -5' |
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29768 | 5' | -63.2 | NC_006273.1 | + | 145410 | 0.67 | 0.656347 |
Target: 5'- uGGCCggCGGUCGCguuuuCCACUGCgaccacauCCCGc -3' miRNA: 3'- -UCGGuaGCCGGCG-----GGUGGCGau------GGGC- -5' |
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29768 | 5' | -63.2 | NC_006273.1 | + | 134430 | 0.67 | 0.637392 |
Target: 5'- cGCCcggcauaaacauGUUGGCCGUCUugCGC-ACCUGc -3' miRNA: 3'- uCGG------------UAGCCGGCGGGugGCGaUGGGC- -5' |
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29768 | 5' | -63.2 | NC_006273.1 | + | 61575 | 0.67 | 0.627907 |
Target: 5'- cGGCCGggucgcgCGGCCGUuuggCCACCGCgcGCgCGu -3' miRNA: 3'- -UCGGUa------GCCGGCG----GGUGGCGa-UGgGC- -5' |
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29768 | 5' | -63.2 | NC_006273.1 | + | 189900 | 0.67 | 0.622216 |
Target: 5'- cGCCGUCGGCUGCgacggugguugugaaCuCACCGUcgGCUCGc -3' miRNA: 3'- uCGGUAGCCGGCG---------------G-GUGGCGa-UGGGC- -5' |
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29768 | 5' | -63.2 | NC_006273.1 | + | 449 | 0.67 | 0.665802 |
Target: 5'- cGCCGUC-GCCGuaCCCACCGCaGCacaCGc -3' miRNA: 3'- uCGGUAGcCGGC--GGGUGGCGaUGg--GC- -5' |
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29768 | 5' | -63.2 | NC_006273.1 | + | 162915 | 0.67 | 0.61558 |
Target: 5'- cGCCGUgacggacgUGGCCGCCggCACCGacggugcguuacuuCUACCCa -3' miRNA: 3'- uCGGUA--------GCCGGCGG--GUGGC--------------GAUGGGc -5' |
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29768 | 5' | -63.2 | NC_006273.1 | + | 156807 | 0.68 | 0.590052 |
Target: 5'- aAGCgAUUGGCgGCCCGuucugaggaGCUACCCu -3' miRNA: 3'- -UCGgUAGCCGgCGGGUgg-------CGAUGGGc -5' |
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29768 | 5' | -63.2 | NC_006273.1 | + | 202601 | 0.68 | 0.575007 |
Target: 5'- cAGCCGUgagaacuuuguggugCGcGCCGCCgACuCGCUGCCg- -3' miRNA: 3'- -UCGGUA---------------GC-CGGCGGgUG-GCGAUGGgc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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