miRNA display CGI


Results 41 - 60 of 214 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29768 5' -63.2 NC_006273.1 + 130503 0.7 0.457719
Target:  5'- -uCCAccUCGGCCGCCgGCCGCgugugaggcaaacaGCCCu -3'
miRNA:   3'- ucGGU--AGCCGGCGGgUGGCGa-------------UGGGc -5'
29768 5' -63.2 NC_006273.1 + 95200 0.7 0.443298
Target:  5'- -cCCAUCGGCCGCCCAgCCGgggucggcgccucggACCCc -3'
miRNA:   3'- ucGGUAGCCGGCGGGU-GGCga-------------UGGGc -5'
29768 5' -63.2 NC_006273.1 + 233185 0.7 0.443298
Target:  5'- cGCCGUCGGaCCcaccaucaccgucgGCgCCGCCGCUGCugCCGc -3'
miRNA:   3'- uCGGUAGCC-GG--------------CG-GGUGGCGAUG--GGC- -5'
29768 5' -63.2 NC_006273.1 + 38292 0.7 0.443298
Target:  5'- cGCCGUCGGaCCcaccaucaccgucgGCgCCGCCGCUGCugCCGc -3'
miRNA:   3'- uCGGUAGCC-GG--------------CG-GGUGGCGAUG--GGC- -5'
29768 5' -63.2 NC_006273.1 + 46413 0.7 0.445825
Target:  5'- gAGCCccAUCGG--GCCCGCCaCUGCCCGu -3'
miRNA:   3'- -UCGG--UAGCCggCGGGUGGcGAUGGGC- -5'
29768 5' -63.2 NC_006273.1 + 73567 0.7 0.453451
Target:  5'- aGGCCGacgcgCGGaCCcuccgauguccugGCCCGCCGCUGCCg- -3'
miRNA:   3'- -UCGGUa----GCC-GG-------------CGGGUGGCGAUGGgc -5'
29768 5' -63.2 NC_006273.1 + 91180 0.7 0.462869
Target:  5'- cGCCGUgcCGGUCGUCgCACCGCUcgGCCaCGc -3'
miRNA:   3'- uCGGUA--GCCGGCGG-GUGGCGA--UGG-GC- -5'
29768 5' -63.2 NC_006273.1 + 206256 0.7 0.48025
Target:  5'- cGCCGUCaaGGCCGCCUcuucuggcccuCCGCcACCCu -3'
miRNA:   3'- uCGGUAG--CCGGCGGGu----------GGCGaUGGGc -5'
29768 5' -63.2 NC_006273.1 + 118444 0.7 0.475874
Target:  5'- uAGCCcgucacgGUCGGCCGCCgugaggucuggaaACCGCUgugugACCCa -3'
miRNA:   3'- -UCGG-------UAGCCGGCGGg------------UGGCGA-----UGGGc -5'
29768 5' -63.2 NC_006273.1 + 72319 0.7 0.462869
Target:  5'- cGCCGUCGccGCCGCCucggacuccugCACCGuCUcGCCCGc -3'
miRNA:   3'- uCGGUAGC--CGGCGG-----------GUGGC-GA-UGGGC- -5'
29768 5' -63.2 NC_006273.1 + 24167 0.7 0.489059
Target:  5'- uGGCUAacgucUCGGCgGCCUACCccacCUACCUGg -3'
miRNA:   3'- -UCGGU-----AGCCGgCGGGUGGc---GAUGGGC- -5'
29768 5' -63.2 NC_006273.1 + 49651 0.7 0.48025
Target:  5'- aGGUCAUCGuagcaguagauGCCGCCg--CGCUGCCCGa -3'
miRNA:   3'- -UCGGUAGC-----------CGGCGGgugGCGAUGGGC- -5'
29768 5' -63.2 NC_006273.1 + 198250 0.7 0.471519
Target:  5'- aGGCCA-CGGCCGCCagcaccuCCGCgGCCg- -3'
miRNA:   3'- -UCGGUaGCCGGCGGgu-----GGCGaUGGgc -5'
29768 5' -63.2 NC_006273.1 + 152603 0.69 0.525009
Target:  5'- cGCCAgcgggugugucUCGGUgGCCCGCUGCacgGCCgCGc -3'
miRNA:   3'- uCGGU-----------AGCCGgCGGGUGGCGa--UGG-GC- -5'
29768 5' -63.2 NC_006273.1 + 94382 0.69 0.525009
Target:  5'- gGGCCGUgGGCCGggCACCggGCgcgGCCCGc -3'
miRNA:   3'- -UCGGUAgCCGGCggGUGG--CGa--UGGGC- -5'
29768 5' -63.2 NC_006273.1 + 85826 0.69 0.525009
Target:  5'- cGGCC--CGGCCGCcgCCACCGUUAUUCc -3'
miRNA:   3'- -UCGGuaGCCGGCG--GGUGGCGAUGGGc -5'
29768 5' -63.2 NC_006273.1 + 233382 0.69 0.522276
Target:  5'- cGGCCuccgucucCGuGCCGCUCGCCGCUGgcggcgacgucgucCCCGu -3'
miRNA:   3'- -UCGGua------GC-CGGCGGGUGGCGAU--------------GGGC- -5'
29768 5' -63.2 NC_006273.1 + 93938 0.69 0.53049
Target:  5'- gGGCCAggacccgcgggaGGCgCGCCCugCGCaUGCgCCGg -3'
miRNA:   3'- -UCGGUag----------CCG-GCGGGugGCG-AUG-GGC- -5'
29768 5' -63.2 NC_006273.1 + 234317 0.69 0.506898
Target:  5'- cGCC--CGGCgGCCCGCgGgguuCUACCCGg -3'
miRNA:   3'- uCGGuaGCCGgCGGGUGgC----GAUGGGC- -5'
29768 5' -63.2 NC_006273.1 + 118387 0.69 0.525009
Target:  5'- cGGCUaguGUCGuguuaGCCG-CCGCUGCUGCCCa -3'
miRNA:   3'- -UCGG---UAGC-----CGGCgGGUGGCGAUGGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.