miRNA display CGI


Results 1 - 20 of 214 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29768 5' -63.2 NC_006273.1 + 179596 1.07 0.00145
Target:  5'- aAGCCAUCGGCCGCCCACCGCUACCCGu -3'
miRNA:   3'- -UCGGUAGCCGGCGGGUGGCGAUGGGC- -5'
29768 5' -63.2 NC_006273.1 + 140578 0.8 0.12096
Target:  5'- cGUCGUCGGCCGaCCGCCGCgACCCc -3'
miRNA:   3'- uCGGUAGCCGGCgGGUGGCGaUGGGc -5'
29768 5' -63.2 NC_006273.1 + 161648 0.79 0.133188
Target:  5'- gGGCC-UCGGCCG-CCGCCGCcACCCa -3'
miRNA:   3'- -UCGGuAGCCGGCgGGUGGCGaUGGGc -5'
29768 5' -63.2 NC_006273.1 + 32830 0.77 0.18115
Target:  5'- uGCCGUCGGCCGCCaCGCCG--GCCaCGc -3'
miRNA:   3'- uCGGUAGCCGGCGG-GUGGCgaUGG-GC- -5'
29768 5' -63.2 NC_006273.1 + 47082 0.77 0.189765
Target:  5'- uGGCCAUCGGCgCGCUCAUCGCgUACUUa -3'
miRNA:   3'- -UCGGUAGCCG-GCGGGUGGCG-AUGGGc -5'
29768 5' -63.2 NC_006273.1 + 161998 0.76 0.198739
Target:  5'- gGGCCGU-GGCUGCCCGCgCGCUuugcgacucuggGCCCGc -3'
miRNA:   3'- -UCGGUAgCCGGCGGGUG-GCGA------------UGGGC- -5'
29768 5' -63.2 NC_006273.1 + 171119 0.76 0.2228
Target:  5'- cGCCAuccgcuUCGGCCG-CCGCCGCaacGCCCGu -3'
miRNA:   3'- uCGGU------AGCCGGCgGGUGGCGa--UGGGC- -5'
29768 5' -63.2 NC_006273.1 + 83381 0.75 0.2279
Target:  5'- gGGCCAcgUCgGGCUGCugCCGCCGCcACCCGg -3'
miRNA:   3'- -UCGGU--AG-CCGGCG--GGUGGCGaUGGGC- -5'
29768 5' -63.2 NC_006273.1 + 198729 0.74 0.284463
Target:  5'- gAGUCGUCGGCUaCCCGCCGCcagGCCa- -3'
miRNA:   3'- -UCGGUAGCCGGcGGGUGGCGa--UGGgc -5'
29768 5' -63.2 NC_006273.1 + 41257 0.74 0.290692
Target:  5'- cGCCucagCGGUCGCCCuaucacaaccGCCGCUACUCu -3'
miRNA:   3'- uCGGua--GCCGGCGGG----------UGGCGAUGGGc -5'
29768 5' -63.2 NC_006273.1 + 17185 0.74 0.297027
Target:  5'- cGGUCGUCcGCCGUCgGCCGCcGCCCa -3'
miRNA:   3'- -UCGGUAGcCGGCGGgUGGCGaUGGGc -5'
29768 5' -63.2 NC_006273.1 + 68065 0.73 0.310018
Target:  5'- cGCCGU-GGCCGCcgcugCCGCCGCUguggccggaguGCCCGu -3'
miRNA:   3'- uCGGUAgCCGGCG-----GGUGGCGA-----------UGGGC- -5'
29768 5' -63.2 NC_006273.1 + 153776 0.73 0.316674
Target:  5'- aGGCCGcuUCGGCC-UCCGCCGCgGCCgCGg -3'
miRNA:   3'- -UCGGU--AGCCGGcGGGUGGCGaUGG-GC- -5'
29768 5' -63.2 NC_006273.1 + 21576 0.73 0.323437
Target:  5'- uGcCCGUCGGCUGCCUguuccuGCUGCUACgCGg -3'
miRNA:   3'- uC-GGUAGCCGGCGGG------UGGCGAUGgGC- -5'
29768 5' -63.2 NC_006273.1 + 197305 0.72 0.344367
Target:  5'- cGCCGccgaGGCCGCgCggcgGCUGCUGCCCGa -3'
miRNA:   3'- uCGGUag--CCGGCGgG----UGGCGAUGGGC- -5'
29768 5' -63.2 NC_006273.1 + 87852 0.72 0.344367
Target:  5'- cGUCAUCGGCgCGCCCccAUCGCcuCCCGa -3'
miRNA:   3'- uCGGUAGCCG-GCGGG--UGGCGauGGGC- -5'
29768 5' -63.2 NC_006273.1 + 2412 0.72 0.344367
Target:  5'- cGCCGccgaGGCCGCgCggcgGCUGCUGCCCGa -3'
miRNA:   3'- uCGGUag--CCGGCGgG----UGGCGAUGGGC- -5'
29768 5' -63.2 NC_006273.1 + 96043 0.72 0.344367
Target:  5'- uGGCCuucugCGGCCG-CCACCGCgacuacaacucGCCCGa -3'
miRNA:   3'- -UCGGua---GCCGGCgGGUGGCGa----------UGGGC- -5'
29768 5' -63.2 NC_006273.1 + 193160 0.72 0.351558
Target:  5'- uGGCac-CGGCCGCCgAagcccaCGCUGCCCGu -3'
miRNA:   3'- -UCGguaGCCGGCGGgUg-----GCGAUGGGC- -5'
29768 5' -63.2 NC_006273.1 + 134217 0.72 0.351558
Target:  5'- cGCCuaCGGCCGCCaCGCCcgUGCCCGa -3'
miRNA:   3'- uCGGuaGCCGGCGG-GUGGcgAUGGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.