miRNA display CGI


Results 21 - 40 of 214 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29768 5' -63.2 NC_006273.1 + 134217 0.72 0.351558
Target:  5'- cGCCuaCGGCCGCCaCGCCcgUGCCCGa -3'
miRNA:   3'- uCGGuaGCCGGCGG-GUGGcgAUGGGC- -5'
29768 5' -63.2 NC_006273.1 + 174113 0.72 0.361801
Target:  5'- cGGCC-UCGGCCGCgCgCGCCGCgcugcaguggcuggACCUGg -3'
miRNA:   3'- -UCGGuAGCCGGCG-G-GUGGCGa-------------UGGGC- -5'
29768 5' -63.2 NC_006273.1 + 196217 0.72 0.366255
Target:  5'- cGCCGcUCGGa-GCaCCGCCGCaGCCCGg -3'
miRNA:   3'- uCGGU-AGCCggCG-GGUGGCGaUGGGC- -5'
29768 5' -63.2 NC_006273.1 + 73130 0.72 0.37376
Target:  5'- gGGCCGUCGcgaGuCCCGCCGCUGCCa- -3'
miRNA:   3'- -UCGGUAGCcggC-GGGUGGCGAUGGgc -5'
29768 5' -63.2 NC_006273.1 + 140084 0.71 0.396895
Target:  5'- uGUCAU-GGCgGCCCACCGUcgACCCc -3'
miRNA:   3'- uCGGUAgCCGgCGGGUGGCGa-UGGGc -5'
29768 5' -63.2 NC_006273.1 + 141807 0.71 0.396895
Target:  5'- aGGCCGcgcaGGCCG-CCGCCGCUcaaguuGCCCa -3'
miRNA:   3'- -UCGGUag--CCGGCgGGUGGCGA------UGGGc -5'
29768 5' -63.2 NC_006273.1 + 154234 0.71 0.412015
Target:  5'- cGCUucgugCGGCCGCCCAgcuccauCCGCaACCCc -3'
miRNA:   3'- uCGGua---GCCGGCGGGU-------GGCGaUGGGc -5'
29768 5' -63.2 NC_006273.1 + 38752 0.71 0.412821
Target:  5'- -aCCGUCGuGCCgGCCCACCGCcggcgcagcuCCCGu -3'
miRNA:   3'- ucGGUAGC-CGG-CGGGUGGCGau--------GGGC- -5'
29768 5' -63.2 NC_006273.1 + 168606 0.71 0.412821
Target:  5'- aGGCCAgugucaGcGCCGagCCGCgGCUGCCCGg -3'
miRNA:   3'- -UCGGUag----C-CGGCg-GGUGgCGAUGGGC- -5'
29768 5' -63.2 NC_006273.1 + 204709 0.71 0.412821
Target:  5'- cGCCGgcaccgCGGCCGgCCGCaggaaGCcGCCCGg -3'
miRNA:   3'- uCGGUa-----GCCGGCgGGUGg----CGaUGGGC- -5'
29768 5' -63.2 NC_006273.1 + 233644 0.71 0.412821
Target:  5'- -aCCGUCGuGCCgGCCCACCGCcggcgcagcuCCCGu -3'
miRNA:   3'- ucGGUAGC-CGG-CGGGUGGCGau--------GGGC- -5'
29768 5' -63.2 NC_006273.1 + 201151 0.71 0.412821
Target:  5'- uGCCugcCGGCgGCCCuguGCCGCggguUGCCCGu -3'
miRNA:   3'- uCGGua-GCCGgCGGG---UGGCG----AUGGGC- -5'
29768 5' -63.2 NC_006273.1 + 132359 0.71 0.420931
Target:  5'- aAGCCG-CGGCCGCugCCGCCGCggcguuucgUCCGg -3'
miRNA:   3'- -UCGGUaGCCGGCG--GGUGGCGau-------GGGC- -5'
29768 5' -63.2 NC_006273.1 + 144914 0.71 0.420931
Target:  5'- cGCCcgCucaaGCCGCCCgaACCGCUGCgCGa -3'
miRNA:   3'- uCGGuaGc---CGGCGGG--UGGCGAUGgGC- -5'
29768 5' -63.2 NC_006273.1 + 198619 0.71 0.424201
Target:  5'- gGGCCucggcgugcucaGGCCaCCCGCCGgaGCCCGg -3'
miRNA:   3'- -UCGGuag---------CCGGcGGGUGGCgaUGGGC- -5'
29768 5' -63.2 NC_006273.1 + 22277 0.71 0.429136
Target:  5'- cGCCGUCGGUgCGCUCAuCUGCggcagcggUACCCGa -3'
miRNA:   3'- uCGGUAGCCG-GCGGGU-GGCG--------AUGGGC- -5'
29768 5' -63.2 NC_006273.1 + 202148 0.71 0.437435
Target:  5'- cGCCGUCGucGCCGCCCcgggGCCcucggugcGCUACCgGg -3'
miRNA:   3'- uCGGUAGC--CGGCGGG----UGG--------CGAUGGgC- -5'
29768 5' -63.2 NC_006273.1 + 38292 0.7 0.443298
Target:  5'- cGCCGUCGGaCCcaccaucaccgucgGCgCCGCCGCUGCugCCGc -3'
miRNA:   3'- uCGGUAGCC-GG--------------CG-GGUGGCGAUG--GGC- -5'
29768 5' -63.2 NC_006273.1 + 95200 0.7 0.443298
Target:  5'- -cCCAUCGGCCGCCCAgCCGgggucggcgccucggACCCc -3'
miRNA:   3'- ucGGUAGCCGGCGGGU-GGCga-------------UGGGc -5'
29768 5' -63.2 NC_006273.1 + 233185 0.7 0.443298
Target:  5'- cGCCGUCGGaCCcaccaucaccgucgGCgCCGCCGCUGCugCCGc -3'
miRNA:   3'- uCGGUAGCC-GG--------------CG-GGUGGCGAUG--GGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.