miRNA display CGI


Results 41 - 60 of 214 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29768 5' -63.2 NC_006273.1 + 4523 0.7 0.445825
Target:  5'- aAGCCGacCGGCCGCCgAcCCGUUcCCCa -3'
miRNA:   3'- -UCGGUa-GCCGGCGGgU-GGCGAuGGGc -5'
29768 5' -63.2 NC_006273.1 + 22260 0.7 0.445825
Target:  5'- -aCCAUCGuGCCGCuCCAUCGCaGCCaCGc -3'
miRNA:   3'- ucGGUAGC-CGGCG-GGUGGCGaUGG-GC- -5'
29768 5' -63.2 NC_006273.1 + 46413 0.7 0.445825
Target:  5'- gAGCCccAUCGG--GCCCGCCaCUGCCCGu -3'
miRNA:   3'- -UCGG--UAGCCggCGGGUGGcGAUGGGC- -5'
29768 5' -63.2 NC_006273.1 + 73567 0.7 0.453451
Target:  5'- aGGCCGacgcgCGGaCCcuccgauguccugGCCCGCCGCUGCCg- -3'
miRNA:   3'- -UCGGUa----GCC-GG-------------CGGGUGGCGAUGGgc -5'
29768 5' -63.2 NC_006273.1 + 130503 0.7 0.457719
Target:  5'- -uCCAccUCGGCCGCCgGCCGCgugugaggcaaacaGCCCu -3'
miRNA:   3'- ucGGU--AGCCGGCGGgUGGCGa-------------UGGGc -5'
29768 5' -63.2 NC_006273.1 + 72319 0.7 0.462869
Target:  5'- cGCCGUCGccGCCGCCucggacuccugCACCGuCUcGCCCGc -3'
miRNA:   3'- uCGGUAGC--CGGCGG-----------GUGGC-GA-UGGGC- -5'
29768 5' -63.2 NC_006273.1 + 91180 0.7 0.462869
Target:  5'- cGCCGUgcCGGUCGUCgCACCGCUcgGCCaCGc -3'
miRNA:   3'- uCGGUA--GCCGGCGG-GUGGCGA--UGG-GC- -5'
29768 5' -63.2 NC_006273.1 + 68202 0.7 0.462869
Target:  5'- cGGCCuccgCGGCCgcugcGCCCGCCGUgGCCa- -3'
miRNA:   3'- -UCGGua--GCCGG-----CGGGUGGCGaUGGgc -5'
29768 5' -63.2 NC_006273.1 + 198250 0.7 0.471519
Target:  5'- aGGCCA-CGGCCGCCagcaccuCCGCgGCCg- -3'
miRNA:   3'- -UCGGUaGCCGGCGGgu-----GGCGaUGGgc -5'
29768 5' -63.2 NC_006273.1 + 118444 0.7 0.475874
Target:  5'- uAGCCcgucacgGUCGGCCGCCgugaggucuggaaACCGCUgugugACCCa -3'
miRNA:   3'- -UCGG-------UAGCCGGCGGg------------UGGCGA-----UGGGc -5'
29768 5' -63.2 NC_006273.1 + 49651 0.7 0.48025
Target:  5'- aGGUCAUCGuagcaguagauGCCGCCg--CGCUGCCCGa -3'
miRNA:   3'- -UCGGUAGC-----------CGGCGGgugGCGAUGGGC- -5'
29768 5' -63.2 NC_006273.1 + 206256 0.7 0.48025
Target:  5'- cGCCGUCaaGGCCGCCUcuucuggcccuCCGCcACCCu -3'
miRNA:   3'- uCGGUAG--CCGGCGGGu----------GGCGaUGGGc -5'
29768 5' -63.2 NC_006273.1 + 24167 0.7 0.489059
Target:  5'- uGGCUAacgucUCGGCgGCCUACCccacCUACCUGg -3'
miRNA:   3'- -UCGGU-----AGCCGgCGGGUGGc---GAUGGGC- -5'
29768 5' -63.2 NC_006273.1 + 193966 0.69 0.49527
Target:  5'- cGGUCAaCGGUaacuCGCCCugggcuccgacggcGCCGUUGCCCGg -3'
miRNA:   3'- -UCGGUaGCCG----GCGGG--------------UGGCGAUGGGC- -5'
29768 5' -63.2 NC_006273.1 + 186238 0.69 0.497942
Target:  5'- cGCCAUgGacGCCGUCUACCGuCUGgCCGa -3'
miRNA:   3'- uCGGUAgC--CGGCGGGUGGC-GAUgGGC- -5'
29768 5' -63.2 NC_006273.1 + 70827 0.69 0.497942
Target:  5'- uGGCCuUCGGCaCGCuggcgggccgaCCGCCGC-GCCCu -3'
miRNA:   3'- -UCGGuAGCCG-GCG-----------GGUGGCGaUGGGc -5'
29768 5' -63.2 NC_006273.1 + 148846 0.69 0.497942
Target:  5'- cGUCGcUGGCUGUugCCGCCGCUGCCgCGu -3'
miRNA:   3'- uCGGUaGCCGGCG--GGUGGCGAUGG-GC- -5'
29768 5' -63.2 NC_006273.1 + 234317 0.69 0.506898
Target:  5'- cGCC--CGGCgGCCCGCgGgguuCUACCCGg -3'
miRNA:   3'- uCGGuaGCCGgCGGGUGgC----GAUGGGC- -5'
29768 5' -63.2 NC_006273.1 + 5852 0.69 0.506898
Target:  5'- cGCCaAUUGGCgGCCCuCCGUUcgGCUCGg -3'
miRNA:   3'- uCGG-UAGCCGgCGGGuGGCGA--UGGGC- -5'
29768 5' -63.2 NC_006273.1 + 233236 0.69 0.506898
Target:  5'- cGCCGUCGcGuCCGCCCcgaccACCGCgUGCgCGu -3'
miRNA:   3'- uCGGUAGC-C-GGCGGG-----UGGCG-AUGgGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.