miRNA display CGI


Results 61 - 80 of 214 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29768 5' -63.2 NC_006273.1 + 233236 0.69 0.506898
Target:  5'- cGCCGUCGcGuCCGCCCcgaccACCGCgUGCgCGu -3'
miRNA:   3'- uCGGUAGC-C-GGCGGG-----UGGCG-AUGgGC- -5'
29768 5' -63.2 NC_006273.1 + 234317 0.69 0.506898
Target:  5'- cGCC--CGGCgGCCCGCgGgguuCUACCCGg -3'
miRNA:   3'- uCGGuaGCCGgCGGGUGgC----GAUGGGC- -5'
29768 5' -63.2 NC_006273.1 + 39424 0.69 0.506898
Target:  5'- cGCC--CGGCgGCCCGCgGgguuCUACCCGg -3'
miRNA:   3'- uCGGuaGCCGgCGGGUGgC----GAUGGGC- -5'
29768 5' -63.2 NC_006273.1 + 90314 0.69 0.506898
Target:  5'- cGCCAgCGGCguCGCCCGCgGCUAggCCGa -3'
miRNA:   3'- uCGGUaGCCG--GCGGGUGgCGAUg-GGC- -5'
29768 5' -63.2 NC_006273.1 + 117570 0.69 0.513207
Target:  5'- cGCCGUagCGGCCccuccuucugcuucGCCagCACCGCUGCCUu -3'
miRNA:   3'- uCGGUA--GCCGG--------------CGG--GUGGCGAUGGGc -5'
29768 5' -63.2 NC_006273.1 + 91243 0.69 0.515921
Target:  5'- aGGCU-UCGGCgGCgUGCCGCUgACCCa -3'
miRNA:   3'- -UCGGuAGCCGgCGgGUGGCGA-UGGGc -5'
29768 5' -63.2 NC_006273.1 + 140449 0.69 0.515921
Target:  5'- aAGCCGUcgCGGUCGaCC-CCGCU-CCCGa -3'
miRNA:   3'- -UCGGUA--GCCGGCgGGuGGCGAuGGGC- -5'
29768 5' -63.2 NC_006273.1 + 233382 0.69 0.522276
Target:  5'- cGGCCuccgucucCGuGCCGCUCGCCGCUGgcggcgacgucgucCCCGu -3'
miRNA:   3'- -UCGGua------GC-CGGCGGGUGGCGAU--------------GGGC- -5'
29768 5' -63.2 NC_006273.1 + 38489 0.69 0.522276
Target:  5'- cGGCCuccgucucCGuGCCGCUCGCCGCUGgcggcgacgucgucCCCGu -3'
miRNA:   3'- -UCGGua------GC-CGGCGGGUGGCGAU--------------GGGC- -5'
29768 5' -63.2 NC_006273.1 + 133295 0.69 0.525009
Target:  5'- cGGCuCGUCGucacCCGCguguggCCGCCGCUGCUCGa -3'
miRNA:   3'- -UCG-GUAGCc---GGCG------GGUGGCGAUGGGC- -5'
29768 5' -63.2 NC_006273.1 + 85826 0.69 0.525009
Target:  5'- cGGCC--CGGCCGCcgCCACCGUUAUUCc -3'
miRNA:   3'- -UCGGuaGCCGGCG--GGUGGCGAUGGGc -5'
29768 5' -63.2 NC_006273.1 + 94382 0.69 0.525009
Target:  5'- gGGCCGUgGGCCGggCACCggGCgcgGCCCGc -3'
miRNA:   3'- -UCGGUAgCCGGCggGUGG--CGa--UGGGC- -5'
29768 5' -63.2 NC_006273.1 + 118387 0.69 0.525009
Target:  5'- cGGCUaguGUCGuguuaGCCG-CCGCUGCUGCCCa -3'
miRNA:   3'- -UCGG---UAGC-----CGGCgGGUGGCGAUGGGc -5'
29768 5' -63.2 NC_006273.1 + 152603 0.69 0.525009
Target:  5'- cGCCAgcgggugugucUCGGUgGCCCGCUGCacgGCCgCGc -3'
miRNA:   3'- uCGGU-----------AGCCGgCGGGUGGCGa--UGG-GC- -5'
29768 5' -63.2 NC_006273.1 + 93938 0.69 0.53049
Target:  5'- gGGCCAggacccgcgggaGGCgCGCCCugCGCaUGCgCCGg -3'
miRNA:   3'- -UCGGUag----------CCG-GCGGGugGCG-AUG-GGC- -5'
29768 5' -63.2 NC_006273.1 + 31197 0.69 0.534156
Target:  5'- cGGCCGgcguccaGGCUGCCCugguuGCCGCUgcggguaacGCCCu -3'
miRNA:   3'- -UCGGUag-----CCGGCGGG-----UGGCGA---------UGGGc -5'
29768 5' -63.2 NC_006273.1 + 119895 0.69 0.534156
Target:  5'- aGGCCGUacUGGCCGCCCGC----GCCCu -3'
miRNA:   3'- -UCGGUA--GCCGGCGGGUGgcgaUGGGc -5'
29768 5' -63.2 NC_006273.1 + 192546 0.69 0.534156
Target:  5'- cAGCCAUCGGCCagacggaaCCCAUCGCcuuugUGCaCCu -3'
miRNA:   3'- -UCGGUAGCCGGc-------GGGUGGCG-----AUG-GGc -5'
29768 5' -63.2 NC_006273.1 + 179250 0.69 0.543359
Target:  5'- --gCGUCGGUCGCCgccuCCGCgGCCCGu -3'
miRNA:   3'- ucgGUAGCCGGCGGgu--GGCGaUGGGC- -5'
29768 5' -63.2 NC_006273.1 + 38332 0.69 0.543359
Target:  5'- uGUCGUC-GCCGCCaccgucguCGCCGCUGCCg- -3'
miRNA:   3'- uCGGUAGcCGGCGG--------GUGGCGAUGGgc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.