miRNA display CGI


Results 81 - 100 of 214 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29768 5' -63.2 NC_006273.1 + 189800 0.68 0.549833
Target:  5'- cGGCCAU-GGCCGCCUgcacggcagcuuguACCGCcucgGCCaCGc -3'
miRNA:   3'- -UCGGUAgCCGGCGGG--------------UGGCGa---UGG-GC- -5'
29768 5' -63.2 NC_006273.1 + 82526 0.68 0.552614
Target:  5'- cGCCAaCGGCCuuuCCCGCgGC-GCCCa -3'
miRNA:   3'- uCGGUaGCCGGc--GGGUGgCGaUGGGc -5'
29768 5' -63.2 NC_006273.1 + 32655 0.68 0.552614
Target:  5'- uGGCCGUCGG-CGUCgCGUCGCagGCCCGa -3'
miRNA:   3'- -UCGGUAGCCgGCGG-GUGGCGa-UGGGC- -5'
29768 5' -63.2 NC_006273.1 + 21697 0.68 0.552614
Target:  5'- cGCCAcUCGGaCCGCUC-CUGCgACCUGg -3'
miRNA:   3'- uCGGU-AGCC-GGCGGGuGGCGaUGGGC- -5'
29768 5' -63.2 NC_006273.1 + 41922 0.68 0.552614
Target:  5'- cGCCAccacuagCGG-CGCCCuuGCCGCUAguuCCCGg -3'
miRNA:   3'- uCGGUa------GCCgGCGGG--UGGCGAU---GGGC- -5'
29768 5' -63.2 NC_006273.1 + 56654 0.68 0.561916
Target:  5'- cGUgGUCGugaucaccGCCGCcgCCACCGCUGCUCa -3'
miRNA:   3'- uCGgUAGC--------CGGCG--GGUGGCGAUGGGc -5'
29768 5' -63.2 NC_006273.1 + 71537 0.68 0.561916
Target:  5'- gGGCCcUC-GCCGgCgGCCGCUGCCgGc -3'
miRNA:   3'- -UCGGuAGcCGGCgGgUGGCGAUGGgC- -5'
29768 5' -63.2 NC_006273.1 + 113584 0.68 0.561916
Target:  5'- -cCCGUCGGCgGCCgagcgcaaaCACCGacacCUGCCCGu -3'
miRNA:   3'- ucGGUAGCCGgCGG---------GUGGC----GAUGGGC- -5'
29768 5' -63.2 NC_006273.1 + 198923 0.68 0.571259
Target:  5'- cGCCAgccCGaGCCGCUaagGCCGCaUGCCCc -3'
miRNA:   3'- uCGGUa--GC-CGGCGGg--UGGCG-AUGGGc -5'
29768 5' -63.2 NC_006273.1 + 114553 0.68 0.571259
Target:  5'- cGCCuuaaGGCCgaGUCCACCGUcgcGCCCGa -3'
miRNA:   3'- uCGGuag-CCGG--CGGGUGGCGa--UGGGC- -5'
29768 5' -63.2 NC_006273.1 + 202601 0.68 0.575007
Target:  5'- cAGCCGUgagaacuuuguggugCGcGCCGCCgACuCGCUGCCg- -3'
miRNA:   3'- -UCGGUA---------------GC-CGGCGGgUG-GCGAUGGgc -5'
29768 5' -63.2 NC_006273.1 + 59073 0.68 0.578761
Target:  5'- cGCCGggagacaGGCCGCCCAaacagcgaguagCGCUGCUCa -3'
miRNA:   3'- uCGGUag-----CCGGCGGGUg-----------GCGAUGGGc -5'
29768 5' -63.2 NC_006273.1 + 87819 0.68 0.58064
Target:  5'- uGCCcc--GCCGCCC-CCGCUGCUCc -3'
miRNA:   3'- uCGGuagcCGGCGGGuGGCGAUGGGc -5'
29768 5' -63.2 NC_006273.1 + 94254 0.68 0.58064
Target:  5'- cGGCCGUgCuGCgGUCCGCaCGCUgcGCCCGc -3'
miRNA:   3'- -UCGGUA-GcCGgCGGGUG-GCGA--UGGGC- -5'
29768 5' -63.2 NC_006273.1 + 66837 0.68 0.58064
Target:  5'- cGCUA--GGCgGCCUGCaGCUACCCGa -3'
miRNA:   3'- uCGGUagCCGgCGGGUGgCGAUGGGC- -5'
29768 5' -63.2 NC_006273.1 + 130095 0.68 0.58064
Target:  5'- cGCUAU-GGCCuGCCUGCCGCgcgACCUc -3'
miRNA:   3'- uCGGUAgCCGG-CGGGUGGCGa--UGGGc -5'
29768 5' -63.2 NC_006273.1 + 45247 0.68 0.58064
Target:  5'- uGCC--CGuGCCGCCCgGCgGCUGCUCGc -3'
miRNA:   3'- uCGGuaGC-CGGCGGG-UGgCGAUGGGC- -5'
29768 5' -63.2 NC_006273.1 + 154436 0.68 0.58064
Target:  5'- cAGCUcgUGGCCGCgCUAUCGaUGCCUGu -3'
miRNA:   3'- -UCGGuaGCCGGCG-GGUGGCgAUGGGC- -5'
29768 5' -63.2 NC_006273.1 + 218501 0.68 0.58064
Target:  5'- cAGCC--UGGCCGCgCGCCGCagaCCGu -3'
miRNA:   3'- -UCGGuaGCCGGCGgGUGGCGaugGGC- -5'
29768 5' -63.2 NC_006273.1 + 46461 0.68 0.58064
Target:  5'- aAGCCgGUCGGCUGgacaCCGCCGgUgacGCCCa -3'
miRNA:   3'- -UCGG-UAGCCGGCg---GGUGGCgA---UGGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.