miRNA display CGI


Results 101 - 120 of 214 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29768 5' -63.2 NC_006273.1 + 131099 0.68 0.584401
Target:  5'- aGGCCGagacgCGGCCGCUCuaccggcaucucuuCCGCacGCCCGu -3'
miRNA:   3'- -UCGGUa----GCCGGCGGGu-------------GGCGa-UGGGC- -5'
29768 5' -63.2 NC_006273.1 + 68211 0.68 0.589109
Target:  5'- gAGCUggcggGUCGGaucacgcccCCGCCCGCCGaCUuccagcgGCCCGu -3'
miRNA:   3'- -UCGG-----UAGCC---------GGCGGGUGGC-GA-------UGGGC- -5'
29768 5' -63.2 NC_006273.1 + 132992 0.68 0.590052
Target:  5'- -uUCAUCGuGCCcgacGCCUACCGCgaacACCCGc -3'
miRNA:   3'- ucGGUAGC-CGG----CGGGUGGCGa---UGGGC- -5'
29768 5' -63.2 NC_006273.1 + 213242 0.68 0.590052
Target:  5'- -cUCAgagaCGGCCG-CCGCCGCUACCg- -3'
miRNA:   3'- ucGGUa---GCCGGCgGGUGGCGAUGGgc -5'
29768 5' -63.2 NC_006273.1 + 72960 0.68 0.590052
Target:  5'- cGCCGUCa-CCGCCUcCCGCUcgGCCUGc -3'
miRNA:   3'- uCGGUAGccGGCGGGuGGCGA--UGGGC- -5'
29768 5' -63.2 NC_006273.1 + 156807 0.68 0.590052
Target:  5'- aAGCgAUUGGCgGCCCGuucugaggaGCUACCCu -3'
miRNA:   3'- -UCGgUAGCCGgCGGGUgg-------CGAUGGGc -5'
29768 5' -63.2 NC_006273.1 + 46317 0.68 0.590052
Target:  5'- gGGCgCAagaagCGGCCGCCUacGCCGCcgguccggGCCCc -3'
miRNA:   3'- -UCG-GUa----GCCGGCGGG--UGGCGa-------UGGGc -5'
29768 5' -63.2 NC_006273.1 + 114626 0.68 0.598545
Target:  5'- cGGCCGUguucaccUGGCCGCCCuggcagGCCGgCauccugGCCCGc -3'
miRNA:   3'- -UCGGUA-------GCCGGCGGG------UGGC-Ga-----UGGGC- -5'
29768 5' -63.2 NC_006273.1 + 214784 0.68 0.59949
Target:  5'- cGCCAguucuugcgcuUCGGCCGCCgGguucugucCCGgaACCCa -3'
miRNA:   3'- uCGGU-----------AGCCGGCGGgU--------GGCgaUGGGc -5'
29768 5' -63.2 NC_006273.1 + 72256 0.68 0.59949
Target:  5'- uGCC-UCcGCCGCCUcaGCCGgaGCCCu -3'
miRNA:   3'- uCGGuAGcCGGCGGG--UGGCgaUGGGc -5'
29768 5' -63.2 NC_006273.1 + 70329 0.68 0.59949
Target:  5'- cGCCGUgCGuCUGCCCgugagcACCGCUGCCgCGc -3'
miRNA:   3'- uCGGUA-GCcGGCGGG------UGGCGAUGG-GC- -5'
29768 5' -63.2 NC_006273.1 + 104117 0.68 0.59949
Target:  5'- aAGCCG-CGGCgCGCgCaCGCCGagACCCGa -3'
miRNA:   3'- -UCGGUaGCCG-GCG-G-GUGGCgaUGGGC- -5'
29768 5' -63.2 NC_006273.1 + 152425 0.68 0.59949
Target:  5'- aAGCCAgcgguUCGGCCGCCacguacaaGCggaugUGCUugCCGc -3'
miRNA:   3'- -UCGGU-----AGCCGGCGGg-------UG-----GCGAugGGC- -5'
29768 5' -63.2 NC_006273.1 + 129576 0.68 0.608949
Target:  5'- uAGUCGUCGGCgGCuCCGCUauGCcGCgCCGg -3'
miRNA:   3'- -UCGGUAGCCGgCG-GGUGG--CGaUG-GGC- -5'
29768 5' -63.2 NC_006273.1 + 162811 0.68 0.608949
Target:  5'- cAGCCG-CGGUCGCCgcaGCUGCgggGCCUc -3'
miRNA:   3'- -UCGGUaGCCGGCGGg--UGGCGa--UGGGc -5'
29768 5' -63.2 NC_006273.1 + 85419 0.68 0.608949
Target:  5'- uAGCCGauaUCGGCCGCCaaCGCCG-UAUCgCGu -3'
miRNA:   3'- -UCGGU---AGCCGGCGG--GUGGCgAUGG-GC- -5'
29768 5' -63.2 NC_006273.1 + 140662 0.67 0.614633
Target:  5'- gAGCUGggugggggaucccCGGUCGCCCACCGCggaacgaGCCUa -3'
miRNA:   3'- -UCGGUa------------GCCGGCGGGUGGCGa------UGGGc -5'
29768 5' -63.2 NC_006273.1 + 162915 0.67 0.61558
Target:  5'- cGCCGUgacggacgUGGCCGCCggCACCGacggugcguuacuuCUACCCa -3'
miRNA:   3'- uCGGUA--------GCCGGCGG--GUGGC--------------GAUGGGc -5'
29768 5' -63.2 NC_006273.1 + 35076 0.67 0.618424
Target:  5'- cGCCccCGuGCCGCUCA-CGCUAUCCa -3'
miRNA:   3'- uCGGuaGC-CGGCGGGUgGCGAUGGGc -5'
29768 5' -63.2 NC_006273.1 + 195553 0.67 0.618424
Target:  5'- cGGCUcgCcGCCGCgCCACaCGCUgaGCCCc -3'
miRNA:   3'- -UCGGuaGcCGGCG-GGUG-GCGA--UGGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.