Results 21 - 40 of 214 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
29768 | 5' | -63.2 | NC_006273.1 | + | 43038 | 0.66 | 0.71259 |
Target: 5'- cGCCA-CGGCCGCgCAaCGC-ACCuCGa -3' miRNA: 3'- uCGGUaGCCGGCGgGUgGCGaUGG-GC- -5' |
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29768 | 5' | -63.2 | NC_006273.1 | + | 45342 | 0.66 | 0.707035 |
Target: 5'- cGCCGUCGGaggagucccaccagcCCGucauCCCACCGCaACCg- -3' miRNA: 3'- uCGGUAGCC---------------GGC----GGGUGGCGaUGGgc -5' |
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29768 | 5' | -63.2 | NC_006273.1 | + | 77154 | 0.66 | 0.703321 |
Target: 5'- cGCCGUC-GCCgGCCgACgCGC-GCCCGc -3' miRNA: 3'- uCGGUAGcCGG-CGGgUG-GCGaUGGGC- -5' |
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29768 | 5' | -63.2 | NC_006273.1 | + | 194521 | 0.66 | 0.703321 |
Target: 5'- cGCCGUC-GCCGCCCcgaaaagcgaAgCGCUGCgCa -3' miRNA: 3'- uCGGUAGcCGGCGGG----------UgGCGAUGgGc -5' |
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29768 | 5' | -63.2 | NC_006273.1 | + | 16668 | 0.66 | 0.703321 |
Target: 5'- cGCCGUgGGCU-CCUACCGCg--CCGg -3' miRNA: 3'- uCGGUAgCCGGcGGGUGGCGaugGGC- -5' |
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29768 | 5' | -63.2 | NC_006273.1 | + | 69692 | 0.66 | 0.703321 |
Target: 5'- gAGCUGaCGGCCGCCgAUCGCguagGCagCGg -3' miRNA: 3'- -UCGGUaGCCGGCGGgUGGCGa---UGg-GC- -5' |
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29768 | 5' | -63.2 | NC_006273.1 | + | 234459 | 0.66 | 0.703321 |
Target: 5'- cGCCGUC-GCCGCCCcgaaaagcgaAgCGCUGCgCa -3' miRNA: 3'- uCGGUAGcCGGCGGG----------UgGCGAUGgGc -5' |
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29768 | 5' | -63.2 | NC_006273.1 | + | 140520 | 0.66 | 0.703321 |
Target: 5'- uGCCGUCGagccggggcGUCGCCCguccccaccACCGUccACCCGg -3' miRNA: 3'- uCGGUAGC---------CGGCGGG---------UGGCGa-UGGGC- -5' |
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29768 | 5' | -63.2 | NC_006273.1 | + | 37105 | 0.66 | 0.694001 |
Target: 5'- gAGCCcUCGaagcGCCGCaaguaaCGCCGCagGCCCu -3' miRNA: 3'- -UCGGuAGC----CGGCGg-----GUGGCGa-UGGGc -5' |
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29768 | 5' | -63.2 | NC_006273.1 | + | 200718 | 0.66 | 0.694001 |
Target: 5'- cGCUGcUCGGCucCGCUCACCGCU-CCgGu -3' miRNA: 3'- uCGGU-AGCCG--GCGGGUGGCGAuGGgC- -5' |
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29768 | 5' | -63.2 | NC_006273.1 | + | 163847 | 0.66 | 0.694001 |
Target: 5'- cGCCGgcagCGGCCGCCgGCgaggGCCCu -3' miRNA: 3'- uCGGUa---GCCGGCGGgUGgcgaUGGGc -5' |
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29768 | 5' | -63.2 | NC_006273.1 | + | 221807 | 0.66 | 0.694001 |
Target: 5'- cGGCCcg-GGCCGCCCGgCGggugagcACCCGg -3' miRNA: 3'- -UCGGuagCCGGCGGGUgGCga-----UGGGC- -5' |
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29768 | 5' | -63.2 | NC_006273.1 | + | 71664 | 0.66 | 0.694001 |
Target: 5'- uGCCGcCGGCUGUuucuaCCACCGCcACCa- -3' miRNA: 3'- uCGGUaGCCGGCG-----GGUGGCGaUGGgc -5' |
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29768 | 5' | -63.2 | NC_006273.1 | + | 73149 | 0.66 | 0.684636 |
Target: 5'- cGCCggUGGCUGCgacguuucuaCCGCCGCUuccUCCGg -3' miRNA: 3'- uCGGuaGCCGGCG----------GGUGGCGAu--GGGC- -5' |
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29768 | 5' | -63.2 | NC_006273.1 | + | 119883 | 0.66 | 0.684636 |
Target: 5'- cGGCCGauuuUCuucGCCGCCgCGCCGCUgGCUCu -3' miRNA: 3'- -UCGGU----AGc--CGGCGG-GUGGCGA-UGGGc -5' |
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29768 | 5' | -63.2 | NC_006273.1 | + | 114934 | 0.66 | 0.684636 |
Target: 5'- cGCaacuuUUGGCCGCCacaccuguCACCGCUGCUa- -3' miRNA: 3'- uCGgu---AGCCGGCGG--------GUGGCGAUGGgc -5' |
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29768 | 5' | -63.2 | NC_006273.1 | + | 132087 | 0.66 | 0.684636 |
Target: 5'- gAGCCcgCGcuggcaccGCUGCUggagcgACCGCUGCCCGu -3' miRNA: 3'- -UCGGuaGC--------CGGCGGg-----UGGCGAUGGGC- -5' |
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29768 | 5' | -63.2 | NC_006273.1 | + | 113134 | 0.66 | 0.684636 |
Target: 5'- aGGCgG-CGGCCGCagagggcgCGCCGCUcagucgccuacACCCGu -3' miRNA: 3'- -UCGgUaGCCGGCGg-------GUGGCGA-----------UGGGC- -5' |
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29768 | 5' | -63.2 | NC_006273.1 | + | 49762 | 0.66 | 0.684636 |
Target: 5'- uGCuCAUCGagcuuCCGCCggaGCCGCUcccACCCGa -3' miRNA: 3'- uCG-GUAGCc----GGCGGg--UGGCGA---UGGGC- -5' |
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29768 | 5' | -63.2 | NC_006273.1 | + | 118174 | 0.66 | 0.684636 |
Target: 5'- cGCCGgcgUGGCgGCCUgacuGCgGCUgucGCCCGa -3' miRNA: 3'- uCGGUa--GCCGgCGGG----UGgCGA---UGGGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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