miRNA display CGI


Results 61 - 80 of 214 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29768 5' -63.2 NC_006273.1 + 174308 0.67 0.665802
Target:  5'- gGGCuCGgaugUGGaaGCuCCGCCGCUACCgGa -3'
miRNA:   3'- -UCG-GUa---GCCggCG-GGUGGCGAUGGgC- -5'
29768 5' -63.2 NC_006273.1 + 85757 0.67 0.665802
Target:  5'- aAGCCGUUuucGCUGCCguCGCCGUccUGCCCa -3'
miRNA:   3'- -UCGGUAGc--CGGCGG--GUGGCG--AUGGGc -5'
29768 5' -63.2 NC_006273.1 + 216048 0.67 0.665802
Target:  5'- gAGuCCAUC-GCUucagGCCCACCGCUcguuCCCu -3'
miRNA:   3'- -UC-GGUAGcCGG----CGGGUGGCGAu---GGGc -5'
29768 5' -63.2 NC_006273.1 + 30727 0.67 0.665802
Target:  5'- aAGUC-UCGcGaCCGCCUAgugugcccUCGCUGCCCGa -3'
miRNA:   3'- -UCGGuAGC-C-GGCGGGU--------GGCGAUGGGC- -5'
29768 5' -63.2 NC_006273.1 + 235280 0.67 0.665802
Target:  5'- cGCCGUC-GCCGuaCCCACCGCaGCacaCGc -3'
miRNA:   3'- uCGGUAGcCGGC--GGGUGGCGaUGg--GC- -5'
29768 5' -63.2 NC_006273.1 + 449 0.67 0.665802
Target:  5'- cGCCGUC-GCCGuaCCCACCGCaGCacaCGc -3'
miRNA:   3'- uCGGUAGcCGGC--GGGUGGCGaUGg--GC- -5'
29768 5' -63.2 NC_006273.1 + 84605 0.67 0.665802
Target:  5'- aAGCU-UCGGCCGgCUGCUGCaccacagcGCCCGg -3'
miRNA:   3'- -UCGGuAGCCGGCgGGUGGCGa-------UGGGC- -5'
29768 5' -63.2 NC_006273.1 + 195342 0.67 0.665802
Target:  5'- cGCCGUC-GCCGuaCCCACCGCaGCacaCGc -3'
miRNA:   3'- uCGGUAGcCGGC--GGGUGGCGaUGg--GC- -5'
29768 5' -63.2 NC_006273.1 + 191461 0.67 0.660131
Target:  5'- uGGUCGUUGGCCugaugguggaagucgGCgCCGCCGCcGCuuGg -3'
miRNA:   3'- -UCGGUAGCCGG---------------CG-GGUGGCGaUGggC- -5'
29768 5' -63.2 NC_006273.1 + 158760 0.67 0.656347
Target:  5'- aAGaCAagaGGCCGCCgGCCGCgGCCaCGg -3'
miRNA:   3'- -UCgGUag-CCGGCGGgUGGCGaUGG-GC- -5'
29768 5' -63.2 NC_006273.1 + 154997 0.67 0.656347
Target:  5'- cGCCG-CuGCCGCcgccacggCCGCCGCU-CCCGc -3'
miRNA:   3'- uCGGUaGcCGGCG--------GGUGGCGAuGGGC- -5'
29768 5' -63.2 NC_006273.1 + 40488 0.67 0.656347
Target:  5'- cGUgGUCgaGGCgGCCCgGCUGCUGCCgGa -3'
miRNA:   3'- uCGgUAG--CCGgCGGG-UGGCGAUGGgC- -5'
29768 5' -63.2 NC_006273.1 + 38395 0.67 0.656347
Target:  5'- cGCCGUCcGUCG-CCGCCGCUGCg-- -3'
miRNA:   3'- uCGGUAGcCGGCgGGUGGCGAUGggc -5'
29768 5' -63.2 NC_006273.1 + 34104 0.67 0.656347
Target:  5'- cGCCGUCGuCgCGCCCgucGCCGC-ACUCGc -3'
miRNA:   3'- uCGGUAGCcG-GCGGG---UGGCGaUGGGC- -5'
29768 5' -63.2 NC_006273.1 + 145410 0.67 0.656347
Target:  5'- uGGCCggCGGUCGCguuuuCCACUGCgaccacauCCCGc -3'
miRNA:   3'- -UCGGuaGCCGGCG-----GGUGGCGau------GGGC- -5'
29768 5' -63.2 NC_006273.1 + 162198 0.67 0.656347
Target:  5'- uGGUgAUCGGCCGCggugCGCUGCaGCCgGa -3'
miRNA:   3'- -UCGgUAGCCGGCGg---GUGGCGaUGGgC- -5'
29768 5' -63.2 NC_006273.1 + 173787 0.67 0.653506
Target:  5'- cGCCAUcauggacgcgcgcgCGGUgGCCaaacgGCCGCgcgACCCGg -3'
miRNA:   3'- uCGGUA--------------GCCGgCGGg----UGGCGa--UGGGC- -5'
29768 5' -63.2 NC_006273.1 + 202372 0.67 0.646874
Target:  5'- cGCCAgcgCGGUCG-CCACCuggauCUGCCCu -3'
miRNA:   3'- uCGGUa--GCCGGCgGGUGGc----GAUGGGc -5'
29768 5' -63.2 NC_006273.1 + 72601 0.67 0.646874
Target:  5'- cAGCgaCAUgCGGCCGCugCCGCCGCcACCa- -3'
miRNA:   3'- -UCG--GUA-GCCGGCG--GGUGGCGaUGGgc -5'
29768 5' -63.2 NC_006273.1 + 205621 0.67 0.646874
Target:  5'- cGCgCGUCgGGCUGCgCGCCGUcgagACCCu -3'
miRNA:   3'- uCG-GUAG-CCGGCGgGUGGCGa---UGGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.