miRNA display CGI


Results 81 - 100 of 214 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29768 5' -63.2 NC_006273.1 + 202372 0.67 0.646874
Target:  5'- cGCCAgcgCGGUCG-CCACCuggauCUGCCCu -3'
miRNA:   3'- uCGGUa--GCCGGCgGGUGGc----GAUGGGc -5'
29768 5' -63.2 NC_006273.1 + 31759 0.67 0.644031
Target:  5'- gGGCCGUCgcggacgaaaguggGGCCGUCUGCaCGC--CCCGg -3'
miRNA:   3'- -UCGGUAG--------------CCGGCGGGUG-GCGauGGGC- -5'
29768 5' -63.2 NC_006273.1 + 134430 0.67 0.637392
Target:  5'- cGCCcggcauaaacauGUUGGCCGUCUugCGC-ACCUGc -3'
miRNA:   3'- uCGG------------UAGCCGGCGGGugGCGaUGGGC- -5'
29768 5' -63.2 NC_006273.1 + 45500 0.67 0.637392
Target:  5'- cAGCCGaCGGCgaUGCCCGgCGgUccGCCCGa -3'
miRNA:   3'- -UCGGUaGCCG--GCGGGUgGCgA--UGGGC- -5'
29768 5' -63.2 NC_006273.1 + 199481 0.67 0.637392
Target:  5'- gGGUCGUUGGCUcccgcugugcuGgCCGCCGCUGCaCGg -3'
miRNA:   3'- -UCGGUAGCCGG-----------CgGGUGGCGAUGgGC- -5'
29768 5' -63.2 NC_006273.1 + 43254 0.67 0.637392
Target:  5'- gAGCUGUa-GCCGCCUgggacuugucuaGCCGCUGCCg- -3'
miRNA:   3'- -UCGGUAgcCGGCGGG------------UGGCGAUGGgc -5'
29768 5' -63.2 NC_006273.1 + 115440 0.67 0.637392
Target:  5'- uGGCCuUUGcGCUGCCgCuggACCGCgUGCCCGu -3'
miRNA:   3'- -UCGGuAGC-CGGCGG-G---UGGCG-AUGGGC- -5'
29768 5' -63.2 NC_006273.1 + 117479 0.67 0.627907
Target:  5'- cGCCGcgguuuccuUaCGGCguuuguugUGUCCGCCGCUGCCCc -3'
miRNA:   3'- uCGGU---------A-GCCG--------GCGGGUGGCGAUGGGc -5'
29768 5' -63.2 NC_006273.1 + 99289 0.67 0.627907
Target:  5'- cGCgAUC-GCCGCCCACgGCgucCUCGg -3'
miRNA:   3'- uCGgUAGcCGGCGGGUGgCGau-GGGC- -5'
29768 5' -63.2 NC_006273.1 + 87573 0.67 0.627907
Target:  5'- aAGCCG-CGGCUcgGCaCgGCCGCcACCCa -3'
miRNA:   3'- -UCGGUaGCCGG--CG-GgUGGCGaUGGGc -5'
29768 5' -63.2 NC_006273.1 + 121853 0.67 0.627907
Target:  5'- uAGCCcuucucuUC-GCCGCCCGCgCGCccCCCGg -3'
miRNA:   3'- -UCGGu------AGcCGGCGGGUG-GCGauGGGC- -5'
29768 5' -63.2 NC_006273.1 + 61575 0.67 0.627907
Target:  5'- cGGCCGggucgcgCGGCCGUuuggCCACCGCgcGCgCGu -3'
miRNA:   3'- -UCGGUa------GCCGGCG----GGUGGCGa-UGgGC- -5'
29768 5' -63.2 NC_006273.1 + 189900 0.67 0.622216
Target:  5'- cGCCGUCGGCUGCgacggugguugugaaCuCACCGUcgGCUCGc -3'
miRNA:   3'- uCGGUAGCCGGCG---------------G-GUGGCGa-UGGGC- -5'
29768 5' -63.2 NC_006273.1 + 35076 0.67 0.618424
Target:  5'- cGCCccCGuGCCGCUCA-CGCUAUCCa -3'
miRNA:   3'- uCGGuaGC-CGGCGGGUgGCGAUGGGc -5'
29768 5' -63.2 NC_006273.1 + 204717 0.67 0.618424
Target:  5'- gAGCCccgaGGCgCGCCCGCUGCgAUCUGc -3'
miRNA:   3'- -UCGGuag-CCG-GCGGGUGGCGaUGGGC- -5'
29768 5' -63.2 NC_006273.1 + 195553 0.67 0.618424
Target:  5'- cGGCUcgCcGCCGCgCCACaCGCUgaGCCCc -3'
miRNA:   3'- -UCGGuaGcCGGCG-GGUG-GCGA--UGGGc -5'
29768 5' -63.2 NC_006273.1 + 162915 0.67 0.61558
Target:  5'- cGCCGUgacggacgUGGCCGCCggCACCGacggugcguuacuuCUACCCa -3'
miRNA:   3'- uCGGUA--------GCCGGCGG--GUGGC--------------GAUGGGc -5'
29768 5' -63.2 NC_006273.1 + 140662 0.67 0.614633
Target:  5'- gAGCUGggugggggaucccCGGUCGCCCACCGCggaacgaGCCUa -3'
miRNA:   3'- -UCGGUa------------GCCGGCGGGUGGCGa------UGGGc -5'
29768 5' -63.2 NC_006273.1 + 85419 0.68 0.608949
Target:  5'- uAGCCGauaUCGGCCGCCaaCGCCG-UAUCgCGu -3'
miRNA:   3'- -UCGGU---AGCCGGCGG--GUGGCgAUGG-GC- -5'
29768 5' -63.2 NC_006273.1 + 129576 0.68 0.608949
Target:  5'- uAGUCGUCGGCgGCuCCGCUauGCcGCgCCGg -3'
miRNA:   3'- -UCGGUAGCCGgCG-GGUGG--CGaUG-GGC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.