miRNA display CGI


Results 1 - 20 of 214 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29768 5' -63.2 NC_006273.1 + 449 0.67 0.665802
Target:  5'- cGCCGUC-GCCGuaCCCACCGCaGCacaCGc -3'
miRNA:   3'- uCGGUAGcCGGC--GGGUGGCGaUGg--GC- -5'
29768 5' -63.2 NC_006273.1 + 2412 0.72 0.344367
Target:  5'- cGCCGccgaGGCCGCgCggcgGCUGCUGCCCGa -3'
miRNA:   3'- uCGGUag--CCGGCGgG----UGGCGAUGGGC- -5'
29768 5' -63.2 NC_006273.1 + 4523 0.7 0.445825
Target:  5'- aAGCCGacCGGCCGCCgAcCCGUUcCCCa -3'
miRNA:   3'- -UCGGUa-GCCGGCGGgU-GGCGAuGGGc -5'
29768 5' -63.2 NC_006273.1 + 5852 0.69 0.506898
Target:  5'- cGCCaAUUGGCgGCCCuCCGUUcgGCUCGg -3'
miRNA:   3'- uCGG-UAGCCGgCGGGuGGCGA--UGGGC- -5'
29768 5' -63.2 NC_006273.1 + 13364 0.66 0.71259
Target:  5'- gAGUCuUCGGCCauGCUaaaCGCUACCCu -3'
miRNA:   3'- -UCGGuAGCCGG--CGGgugGCGAUGGGc -5'
29768 5' -63.2 NC_006273.1 + 16668 0.66 0.703321
Target:  5'- cGCCGUgGGCU-CCUACCGCg--CCGg -3'
miRNA:   3'- uCGGUAgCCGGcGGGUGGCGaugGGC- -5'
29768 5' -63.2 NC_006273.1 + 17185 0.74 0.297027
Target:  5'- cGGUCGUCcGCCGUCgGCCGCcGCCCa -3'
miRNA:   3'- -UCGGUAGcCGGCGGgUGGCGaUGGGc -5'
29768 5' -63.2 NC_006273.1 + 21576 0.73 0.323437
Target:  5'- uGcCCGUCGGCUGCCUguuccuGCUGCUACgCGg -3'
miRNA:   3'- uC-GGUAGCCGGCGGG------UGGCGAUGgGC- -5'
29768 5' -63.2 NC_006273.1 + 21697 0.68 0.552614
Target:  5'- cGCCAcUCGGaCCGCUC-CUGCgACCUGg -3'
miRNA:   3'- uCGGU-AGCC-GGCGGGuGGCGaUGGGC- -5'
29768 5' -63.2 NC_006273.1 + 22260 0.7 0.445825
Target:  5'- -aCCAUCGuGCCGCuCCAUCGCaGCCaCGc -3'
miRNA:   3'- ucGGUAGC-CGGCG-GGUGGCGaUGG-GC- -5'
29768 5' -63.2 NC_006273.1 + 22277 0.71 0.429136
Target:  5'- cGCCGUCGGUgCGCUCAuCUGCggcagcggUACCCGa -3'
miRNA:   3'- uCGGUAGCCG-GCGGGU-GGCG--------AUGGGC- -5'
29768 5' -63.2 NC_006273.1 + 24167 0.7 0.489059
Target:  5'- uGGCUAacgucUCGGCgGCCUACCccacCUACCUGg -3'
miRNA:   3'- -UCGGU-----AGCCGgCGGGUGGc---GAUGGGC- -5'
29768 5' -63.2 NC_006273.1 + 24323 0.66 0.71259
Target:  5'- uGUCAUgGGUCugcgcuuuCCCACCGCgACCCa -3'
miRNA:   3'- uCGGUAgCCGGc-------GGGUGGCGaUGGGc -5'
29768 5' -63.2 NC_006273.1 + 30727 0.67 0.665802
Target:  5'- aAGUC-UCGcGaCCGCCUAgugugcccUCGCUGCCCGa -3'
miRNA:   3'- -UCGGuAGC-C-GGCGGGU--------GGCGAUGGGC- -5'
29768 5' -63.2 NC_006273.1 + 31197 0.69 0.534156
Target:  5'- cGGCCGgcguccaGGCUGCCCugguuGCCGCUgcggguaacGCCCu -3'
miRNA:   3'- -UCGGUag-----CCGGCGGG-----UGGCGA---------UGGGc -5'
29768 5' -63.2 NC_006273.1 + 31759 0.67 0.644031
Target:  5'- gGGCCGUCgcggacgaaaguggGGCCGUCUGCaCGC--CCCGg -3'
miRNA:   3'- -UCGGUAG--------------CCGGCGGGUG-GCGauGGGC- -5'
29768 5' -63.2 NC_006273.1 + 32655 0.68 0.552614
Target:  5'- uGGCCGUCGG-CGUCgCGUCGCagGCCCGa -3'
miRNA:   3'- -UCGGUAGCCgGCGG-GUGGCGa-UGGGC- -5'
29768 5' -63.2 NC_006273.1 + 32830 0.77 0.18115
Target:  5'- uGCCGUCGGCCGCCaCGCCG--GCCaCGc -3'
miRNA:   3'- uCGGUAGCCGGCGG-GUGGCgaUGG-GC- -5'
29768 5' -63.2 NC_006273.1 + 34104 0.67 0.656347
Target:  5'- cGCCGUCGuCgCGCCCgucGCCGC-ACUCGc -3'
miRNA:   3'- uCGGUAGCcG-GCGGG---UGGCGaUGGGC- -5'
29768 5' -63.2 NC_006273.1 + 35076 0.67 0.618424
Target:  5'- cGCCccCGuGCCGCUCA-CGCUAUCCa -3'
miRNA:   3'- uCGGuaGC-CGGCGGGUgGCGAUGGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.