miRNA display CGI


Results 41 - 60 of 214 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29768 5' -63.2 NC_006273.1 + 46317 0.68 0.590052
Target:  5'- gGGCgCAagaagCGGCCGCCUacGCCGCcgguccggGCCCc -3'
miRNA:   3'- -UCG-GUa----GCCGGCGGG--UGGCGa-------UGGGc -5'
29768 5' -63.2 NC_006273.1 + 46413 0.7 0.445825
Target:  5'- gAGCCccAUCGG--GCCCGCCaCUGCCCGu -3'
miRNA:   3'- -UCGG--UAGCCggCGGGUGGcGAUGGGC- -5'
29768 5' -63.2 NC_006273.1 + 46461 0.68 0.58064
Target:  5'- aAGCCgGUCGGCUGgacaCCGCCGgUgacGCCCa -3'
miRNA:   3'- -UCGG-UAGCCGGCg---GGUGGCgA---UGGGc -5'
29768 5' -63.2 NC_006273.1 + 47082 0.77 0.189765
Target:  5'- uGGCCAUCGGCgCGCUCAUCGCgUACUUa -3'
miRNA:   3'- -UCGGUAGCCG-GCGGGUGGCG-AUGGGc -5'
29768 5' -63.2 NC_006273.1 + 49651 0.7 0.48025
Target:  5'- aGGUCAUCGuagcaguagauGCCGCCg--CGCUGCCCGa -3'
miRNA:   3'- -UCGGUAGC-----------CGGCGGgugGCGAUGGGC- -5'
29768 5' -63.2 NC_006273.1 + 49762 0.66 0.684636
Target:  5'- uGCuCAUCGagcuuCCGCCggaGCCGCUcccACCCGa -3'
miRNA:   3'- uCG-GUAGCc----GGCGGg--UGGCGA---UGGGC- -5'
29768 5' -63.2 NC_006273.1 + 55809 0.66 0.678999
Target:  5'- cAGCCGUcguuucuaagcuuuaCGuGCCGCCUGCaGCUagaACCCGu -3'
miRNA:   3'- -UCGGUA---------------GC-CGGCGGGUGgCGA---UGGGC- -5'
29768 5' -63.2 NC_006273.1 + 56654 0.68 0.561916
Target:  5'- cGUgGUCGugaucaccGCCGCcgCCACCGCUGCUCa -3'
miRNA:   3'- uCGgUAGC--------CGGCG--GGUGGCGAUGGGc -5'
29768 5' -63.2 NC_006273.1 + 59073 0.68 0.578761
Target:  5'- cGCCGggagacaGGCCGCCCAaacagcgaguagCGCUGCUCa -3'
miRNA:   3'- uCGGUag-----CCGGCGGGUg-----------GCGAUGGGc -5'
29768 5' -63.2 NC_006273.1 + 61575 0.67 0.627907
Target:  5'- cGGCCGggucgcgCGGCCGUuuggCCACCGCgcGCgCGu -3'
miRNA:   3'- -UCGGUa------GCCGGCG----GGUGGCGa-UGgGC- -5'
29768 5' -63.2 NC_006273.1 + 66837 0.68 0.58064
Target:  5'- cGCUA--GGCgGCCUGCaGCUACCCGa -3'
miRNA:   3'- uCGGUagCCGgCGGGUGgCGAUGGGC- -5'
29768 5' -63.2 NC_006273.1 + 68065 0.73 0.310018
Target:  5'- cGCCGU-GGCCGCcgcugCCGCCGCUguggccggaguGCCCGu -3'
miRNA:   3'- uCGGUAgCCGGCG-----GGUGGCGA-----------UGGGC- -5'
29768 5' -63.2 NC_006273.1 + 68202 0.7 0.462869
Target:  5'- cGGCCuccgCGGCCgcugcGCCCGCCGUgGCCa- -3'
miRNA:   3'- -UCGGua--GCCGG-----CGGGUGGCGaUGGgc -5'
29768 5' -63.2 NC_006273.1 + 68211 0.68 0.589109
Target:  5'- gAGCUggcggGUCGGaucacgcccCCGCCCGCCGaCUuccagcgGCCCGu -3'
miRNA:   3'- -UCGG-----UAGCC---------GGCGGGUGGC-GA-------UGGGC- -5'
29768 5' -63.2 NC_006273.1 + 69692 0.66 0.703321
Target:  5'- gAGCUGaCGGCCGCCgAUCGCguagGCagCGg -3'
miRNA:   3'- -UCGGUaGCCGGCGGgUGGCGa---UGg-GC- -5'
29768 5' -63.2 NC_006273.1 + 70329 0.68 0.59949
Target:  5'- cGCCGUgCGuCUGCCCgugagcACCGCUGCCgCGc -3'
miRNA:   3'- uCGGUA-GCcGGCGGG------UGGCGAUGG-GC- -5'
29768 5' -63.2 NC_006273.1 + 70827 0.69 0.497942
Target:  5'- uGGCCuUCGGCaCGCuggcgggccgaCCGCCGC-GCCCu -3'
miRNA:   3'- -UCGGuAGCCG-GCG-----------GGUGGCGaUGGGc -5'
29768 5' -63.2 NC_006273.1 + 71537 0.68 0.561916
Target:  5'- gGGCCcUC-GCCGgCgGCCGCUGCCgGc -3'
miRNA:   3'- -UCGGuAGcCGGCgGgUGGCGAUGGgC- -5'
29768 5' -63.2 NC_006273.1 + 71664 0.66 0.694001
Target:  5'- uGCCGcCGGCUGUuucuaCCACCGCcACCa- -3'
miRNA:   3'- uCGGUaGCCGGCG-----GGUGGCGaUGGgc -5'
29768 5' -63.2 NC_006273.1 + 72256 0.68 0.59949
Target:  5'- uGCC-UCcGCCGCCUcaGCCGgaGCCCu -3'
miRNA:   3'- uCGGuAGcCGGCGGG--UGGCgaUGGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.