miRNA display CGI


Results 61 - 80 of 214 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29768 5' -63.2 NC_006273.1 + 72319 0.7 0.462869
Target:  5'- cGCCGUCGccGCCGCCucggacuccugCACCGuCUcGCCCGc -3'
miRNA:   3'- uCGGUAGC--CGGCGG-----------GUGGC-GA-UGGGC- -5'
29768 5' -63.2 NC_006273.1 + 72601 0.67 0.646874
Target:  5'- cAGCgaCAUgCGGCCGCugCCGCCGCcACCa- -3'
miRNA:   3'- -UCG--GUA-GCCGGCG--GGUGGCGaUGGgc -5'
29768 5' -63.2 NC_006273.1 + 72960 0.68 0.590052
Target:  5'- cGCCGUCa-CCGCCUcCCGCUcgGCCUGc -3'
miRNA:   3'- uCGGUAGccGGCGGGuGGCGA--UGGGC- -5'
29768 5' -63.2 NC_006273.1 + 73130 0.72 0.37376
Target:  5'- gGGCCGUCGcgaGuCCCGCCGCUGCCa- -3'
miRNA:   3'- -UCGGUAGCcggC-GGGUGGCGAUGGgc -5'
29768 5' -63.2 NC_006273.1 + 73149 0.66 0.684636
Target:  5'- cGCCggUGGCUGCgacguuucuaCCGCCGCUuccUCCGg -3'
miRNA:   3'- uCGGuaGCCGGCG----------GGUGGCGAu--GGGC- -5'
29768 5' -63.2 NC_006273.1 + 73567 0.7 0.453451
Target:  5'- aGGCCGacgcgCGGaCCcuccgauguccugGCCCGCCGCUGCCg- -3'
miRNA:   3'- -UCGGUa----GCC-GG-------------CGGGUGGCGAUGGgc -5'
29768 5' -63.2 NC_006273.1 + 74583 0.66 0.675235
Target:  5'- cGCCccaAUCcGCCGCCCaACUGCgcguCCCa -3'
miRNA:   3'- uCGG---UAGcCGGCGGG-UGGCGau--GGGc -5'
29768 5' -63.2 NC_006273.1 + 77154 0.66 0.703321
Target:  5'- cGCCGUC-GCCgGCCgACgCGC-GCCCGc -3'
miRNA:   3'- uCGGUAGcCGG-CGGgUG-GCGaUGGGC- -5'
29768 5' -63.2 NC_006273.1 + 82526 0.68 0.552614
Target:  5'- cGCCAaCGGCCuuuCCCGCgGC-GCCCa -3'
miRNA:   3'- uCGGUaGCCGGc--GGGUGgCGaUGGGc -5'
29768 5' -63.2 NC_006273.1 + 83381 0.75 0.2279
Target:  5'- gGGCCAcgUCgGGCUGCugCCGCCGCcACCCGg -3'
miRNA:   3'- -UCGGU--AG-CCGGCG--GGUGGCGaUGGGC- -5'
29768 5' -63.2 NC_006273.1 + 84605 0.67 0.665802
Target:  5'- aAGCU-UCGGCCGgCUGCUGCaccacagcGCCCGg -3'
miRNA:   3'- -UCGGuAGCCGGCgGGUGGCGa-------UGGGC- -5'
29768 5' -63.2 NC_006273.1 + 85419 0.68 0.608949
Target:  5'- uAGCCGauaUCGGCCGCCaaCGCCG-UAUCgCGu -3'
miRNA:   3'- -UCGGU---AGCCGGCGG--GUGGCgAUGG-GC- -5'
29768 5' -63.2 NC_006273.1 + 85757 0.67 0.665802
Target:  5'- aAGCCGUUuucGCUGCCguCGCCGUccUGCCCa -3'
miRNA:   3'- -UCGGUAGc--CGGCGG--GUGGCG--AUGGGc -5'
29768 5' -63.2 NC_006273.1 + 85826 0.69 0.525009
Target:  5'- cGGCC--CGGCCGCcgCCACCGUUAUUCc -3'
miRNA:   3'- -UCGGuaGCCGGCG--GGUGGCGAUGGGc -5'
29768 5' -63.2 NC_006273.1 + 87573 0.67 0.627907
Target:  5'- aAGCCG-CGGCUcgGCaCgGCCGCcACCCa -3'
miRNA:   3'- -UCGGUaGCCGG--CG-GgUGGCGaUGGGc -5'
29768 5' -63.2 NC_006273.1 + 87819 0.68 0.58064
Target:  5'- uGCCcc--GCCGCCC-CCGCUGCUCc -3'
miRNA:   3'- uCGGuagcCGGCGGGuGGCGAUGGGc -5'
29768 5' -63.2 NC_006273.1 + 87852 0.72 0.344367
Target:  5'- cGUCAUCGGCgCGCCCccAUCGCcuCCCGa -3'
miRNA:   3'- uCGGUAGCCG-GCGGG--UGGCGauGGGC- -5'
29768 5' -63.2 NC_006273.1 + 88414 0.67 0.665802
Target:  5'- gAGCUcacGUUaaGGCUGCguuccaCACCGUUGCCCGa -3'
miRNA:   3'- -UCGG---UAG--CCGGCGg-----GUGGCGAUGGGC- -5'
29768 5' -63.2 NC_006273.1 + 89586 0.66 0.675235
Target:  5'- gGGCCGUCgugGGUgGCCUcgcgguggcuGCCGCUACUa- -3'
miRNA:   3'- -UCGGUAG---CCGgCGGG----------UGGCGAUGGgc -5'
29768 5' -63.2 NC_006273.1 + 90314 0.69 0.506898
Target:  5'- cGCCAgCGGCguCGCCCGCgGCUAggCCGa -3'
miRNA:   3'- uCGGUaGCCG--GCGGGUGgCGAUg-GGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.