miRNA display CGI


Results 81 - 100 of 214 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29768 5' -63.2 NC_006273.1 + 90620 0.66 0.675235
Target:  5'- aGGCCA-CGGCCGCCgCGUCG-UGCCUc -3'
miRNA:   3'- -UCGGUaGCCGGCGG-GUGGCgAUGGGc -5'
29768 5' -63.2 NC_006273.1 + 91180 0.7 0.462869
Target:  5'- cGCCGUgcCGGUCGUCgCACCGCUcgGCCaCGc -3'
miRNA:   3'- uCGGUA--GCCGGCGG-GUGGCGA--UGG-GC- -5'
29768 5' -63.2 NC_006273.1 + 91243 0.69 0.515921
Target:  5'- aGGCU-UCGGCgGCgUGCCGCUgACCCa -3'
miRNA:   3'- -UCGGuAGCCGgCGgGUGGCGA-UGGGc -5'
29768 5' -63.2 NC_006273.1 + 92056 0.66 0.7218
Target:  5'- cAGCCGcaugaGGCaaaaGCCCAgcaCGUUACCCa -3'
miRNA:   3'- -UCGGUag---CCGg---CGGGUg--GCGAUGGGc -5'
29768 5' -63.2 NC_006273.1 + 92552 0.66 0.683698
Target:  5'- cAGCCcgUGGCCGUgagcagaCCGCgGUgcacGCCCGu -3'
miRNA:   3'- -UCGGuaGCCGGCG-------GGUGgCGa---UGGGC- -5'
29768 5' -63.2 NC_006273.1 + 93938 0.69 0.53049
Target:  5'- gGGCCAggacccgcgggaGGCgCGCCCugCGCaUGCgCCGg -3'
miRNA:   3'- -UCGGUag----------CCG-GCGGGugGCG-AUG-GGC- -5'
29768 5' -63.2 NC_006273.1 + 94035 0.66 0.675235
Target:  5'- uGCUgcaCGGCCGCCCGuuGCU-CCa- -3'
miRNA:   3'- uCGGua-GCCGGCGGGUggCGAuGGgc -5'
29768 5' -63.2 NC_006273.1 + 94209 0.66 0.7218
Target:  5'- -aCC--CGGCgUGCCCGCCGCccCCCGg -3'
miRNA:   3'- ucGGuaGCCG-GCGGGUGGCGauGGGC- -5'
29768 5' -63.2 NC_006273.1 + 94254 0.68 0.58064
Target:  5'- cGGCCGUgCuGCgGUCCGCaCGCUgcGCCCGc -3'
miRNA:   3'- -UCGGUA-GcCGgCGGGUG-GCGA--UGGGC- -5'
29768 5' -63.2 NC_006273.1 + 94382 0.69 0.525009
Target:  5'- gGGCCGUgGGCCGggCACCggGCgcgGCCCGc -3'
miRNA:   3'- -UCGGUAgCCGGCggGUGG--CGa--UGGGC- -5'
29768 5' -63.2 NC_006273.1 + 94608 0.66 0.67335
Target:  5'- cGCCGgcuuccCGGuCCaCCCGCCGCggaacggacgggACCCGg -3'
miRNA:   3'- uCGGUa-----GCC-GGcGGGUGGCGa-----------UGGGC- -5'
29768 5' -63.2 NC_006273.1 + 95200 0.7 0.443298
Target:  5'- -cCCAUCGGCCGCCCAgCCGgggucggcgccucggACCCc -3'
miRNA:   3'- ucGGUAGCCGGCGGGU-GGCga-------------UGGGc -5'
29768 5' -63.2 NC_006273.1 + 96043 0.72 0.344367
Target:  5'- uGGCCuucugCGGCCG-CCACCGCgacuacaacucGCCCGa -3'
miRNA:   3'- -UCGGua---GCCGGCgGGUGGCGa----------UGGGC- -5'
29768 5' -63.2 NC_006273.1 + 99289 0.67 0.627907
Target:  5'- cGCgAUC-GCCGCCCACgGCgucCUCGg -3'
miRNA:   3'- uCGgUAGcCGGCGGGUGgCGau-GGGC- -5'
29768 5' -63.2 NC_006273.1 + 99942 0.66 0.7218
Target:  5'- gAGCCcUCGaGCguggagacgagCGCgCAgCCGCUGCCCa -3'
miRNA:   3'- -UCGGuAGC-CG-----------GCGgGU-GGCGAUGGGc -5'
29768 5' -63.2 NC_006273.1 + 104117 0.68 0.59949
Target:  5'- aAGCCG-CGGCgCGCgCaCGCCGagACCCGa -3'
miRNA:   3'- -UCGGUaGCCG-GCG-G-GUGGCgaUGGGC- -5'
29768 5' -63.2 NC_006273.1 + 113134 0.66 0.684636
Target:  5'- aGGCgG-CGGCCGCagagggcgCGCCGCUcagucgccuacACCCGu -3'
miRNA:   3'- -UCGgUaGCCGGCGg-------GUGGCGA-----------UGGGC- -5'
29768 5' -63.2 NC_006273.1 + 113584 0.68 0.561916
Target:  5'- -cCCGUCGGCgGCCgagcgcaaaCACCGacacCUGCCCGu -3'
miRNA:   3'- ucGGUAGCCGgCGG---------GUGGC----GAUGGGC- -5'
29768 5' -63.2 NC_006273.1 + 114553 0.68 0.571259
Target:  5'- cGCCuuaaGGCCgaGUCCACCGUcgcGCCCGa -3'
miRNA:   3'- uCGGuag-CCGG--CGGGUGGCGa--UGGGC- -5'
29768 5' -63.2 NC_006273.1 + 114626 0.68 0.598545
Target:  5'- cGGCCGUguucaccUGGCCGCCCuggcagGCCGgCauccugGCCCGc -3'
miRNA:   3'- -UCGGUA-------GCCGGCGGG------UGGC-Ga-----UGGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.