miRNA display CGI


Results 1 - 20 of 214 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29768 5' -63.2 NC_006273.1 + 235280 0.67 0.665802
Target:  5'- cGCCGUC-GCCGuaCCCACCGCaGCacaCGc -3'
miRNA:   3'- uCGGUAGcCGGC--GGGUGGCGaUGg--GC- -5'
29768 5' -63.2 NC_006273.1 + 234459 0.66 0.703321
Target:  5'- cGCCGUC-GCCGCCCcgaaaagcgaAgCGCUGCgCa -3'
miRNA:   3'- uCGGUAGcCGGCGGG----------UgGCGAUGgGc -5'
29768 5' -63.2 NC_006273.1 + 234317 0.69 0.506898
Target:  5'- cGCC--CGGCgGCCCGCgGgguuCUACCCGg -3'
miRNA:   3'- uCGGuaGCCGgCGGGUGgC----GAUGGGC- -5'
29768 5' -63.2 NC_006273.1 + 233644 0.71 0.412821
Target:  5'- -aCCGUCGuGCCgGCCCACCGCcggcgcagcuCCCGu -3'
miRNA:   3'- ucGGUAGC-CGG-CGGGUGGCGau--------GGGC- -5'
29768 5' -63.2 NC_006273.1 + 233382 0.69 0.522276
Target:  5'- cGGCCuccgucucCGuGCCGCUCGCCGCUGgcggcgacgucgucCCCGu -3'
miRNA:   3'- -UCGGua------GC-CGGCGGGUGGCGAU--------------GGGC- -5'
29768 5' -63.2 NC_006273.1 + 233236 0.69 0.506898
Target:  5'- cGCCGUCGcGuCCGCCCcgaccACCGCgUGCgCGu -3'
miRNA:   3'- uCGGUAGC-C-GGCGGG-----UGGCG-AUGgGC- -5'
29768 5' -63.2 NC_006273.1 + 233185 0.7 0.443298
Target:  5'- cGCCGUCGGaCCcaccaucaccgucgGCgCCGCCGCUGCugCCGc -3'
miRNA:   3'- uCGGUAGCC-GG--------------CG-GGUGGCGAUG--GGC- -5'
29768 5' -63.2 NC_006273.1 + 232932 0.66 0.675235
Target:  5'- -cCCAgcgCGGCCGCucCCACUGCUcgcgguccaGCUCGg -3'
miRNA:   3'- ucGGUa--GCCGGCG--GGUGGCGA---------UGGGC- -5'
29768 5' -63.2 NC_006273.1 + 227690 0.69 0.506898
Target:  5'- uGCCG-CGGCCacugCCGCCGCcGCCCa -3'
miRNA:   3'- uCGGUaGCCGGcg--GGUGGCGaUGGGc -5'
29768 5' -63.2 NC_006273.1 + 227108 0.66 0.684636
Target:  5'- cGCCcaCGGCgGCguggguaugCGCCGCUGCCCu -3'
miRNA:   3'- uCGGuaGCCGgCGg--------GUGGCGAUGGGc -5'
29768 5' -63.2 NC_006273.1 + 221807 0.66 0.694001
Target:  5'- cGGCCcg-GGCCGCCCGgCGggugagcACCCGg -3'
miRNA:   3'- -UCGGuagCCGGCGGGUgGCga-----UGGGC- -5'
29768 5' -63.2 NC_006273.1 + 221320 0.66 0.675235
Target:  5'- cAGCCc-CGGCCGCCgAuaGUUACCgGa -3'
miRNA:   3'- -UCGGuaGCCGGCGGgUggCGAUGGgC- -5'
29768 5' -63.2 NC_006273.1 + 218501 0.68 0.58064
Target:  5'- cAGCC--UGGCCGCgCGCCGCagaCCGu -3'
miRNA:   3'- -UCGGuaGCCGGCGgGUGGCGaugGGC- -5'
29768 5' -63.2 NC_006273.1 + 216048 0.67 0.665802
Target:  5'- gAGuCCAUC-GCUucagGCCCACCGCUcguuCCCu -3'
miRNA:   3'- -UC-GGUAGcCGG----CGGGUGGCGAu---GGGc -5'
29768 5' -63.2 NC_006273.1 + 214784 0.68 0.59949
Target:  5'- cGCCAguucuugcgcuUCGGCCGCCgGguucugucCCGgaACCCa -3'
miRNA:   3'- uCGGU-----------AGCCGGCGGgU--------GGCgaUGGGc -5'
29768 5' -63.2 NC_006273.1 + 213422 0.67 0.669578
Target:  5'- cAGCCAguaaUCccuccgcagaugauaGcGCCGCCUagcGCCGuCUACCCGa -3'
miRNA:   3'- -UCGGU----AG---------------C-CGGCGGG---UGGC-GAUGGGC- -5'
29768 5' -63.2 NC_006273.1 + 213242 0.68 0.590052
Target:  5'- -cUCAgagaCGGCCG-CCGCCGCUACCg- -3'
miRNA:   3'- ucGGUa---GCCGGCgGGUGGCGAUGGgc -5'
29768 5' -63.2 NC_006273.1 + 206256 0.7 0.48025
Target:  5'- cGCCGUCaaGGCCGCCUcuucuggcccuCCGCcACCCu -3'
miRNA:   3'- uCGGUAG--CCGGCGGGu----------GGCGaUGGGc -5'
29768 5' -63.2 NC_006273.1 + 205675 0.66 0.683698
Target:  5'- cGUCGUUGGUuaagcgcuacuuuCGCCCGCUGUUGCgCGc -3'
miRNA:   3'- uCGGUAGCCG-------------GCGGGUGGCGAUGgGC- -5'
29768 5' -63.2 NC_006273.1 + 205621 0.67 0.646874
Target:  5'- cGCgCGUCgGGCUGCgCGCCGUcgagACCCu -3'
miRNA:   3'- uCG-GUAG-CCGGCGgGUGGCGa---UGGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.