miRNA display CGI


Results 21 - 40 of 214 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29768 5' -63.2 NC_006273.1 + 204717 0.67 0.618424
Target:  5'- gAGCCccgaGGCgCGCCCGCUGCgAUCUGc -3'
miRNA:   3'- -UCGGuag-CCG-GCGGGUGGCGaUGGGC- -5'
29768 5' -63.2 NC_006273.1 + 204709 0.71 0.412821
Target:  5'- cGCCGgcaccgCGGCCGgCCGCaggaaGCcGCCCGg -3'
miRNA:   3'- uCGGUa-----GCCGGCgGGUGg----CGaUGGGC- -5'
29768 5' -63.2 NC_006273.1 + 202601 0.68 0.575007
Target:  5'- cAGCCGUgagaacuuuguggugCGcGCCGCCgACuCGCUGCCg- -3'
miRNA:   3'- -UCGGUA---------------GC-CGGCGGgUG-GCGAUGGgc -5'
29768 5' -63.2 NC_006273.1 + 202372 0.67 0.646874
Target:  5'- cGCCAgcgCGGUCG-CCACCuggauCUGCCCu -3'
miRNA:   3'- uCGGUa--GCCGGCgGGUGGc----GAUGGGc -5'
29768 5' -63.2 NC_006273.1 + 202148 0.71 0.437435
Target:  5'- cGCCGUCGucGCCGCCCcgggGCCcucggugcGCUACCgGg -3'
miRNA:   3'- uCGGUAGC--CGGCGGG----UGG--------CGAUGGgC- -5'
29768 5' -63.2 NC_006273.1 + 201957 0.66 0.684636
Target:  5'- cGCCGgggCuGUCGCgCGCCGCcgacGCCCGa -3'
miRNA:   3'- uCGGUa--GcCGGCGgGUGGCGa---UGGGC- -5'
29768 5' -63.2 NC_006273.1 + 201151 0.71 0.412821
Target:  5'- uGCCugcCGGCgGCCCuguGCCGCggguUGCCCGu -3'
miRNA:   3'- uCGGua-GCCGgCGGG---UGGCG----AUGGGC- -5'
29768 5' -63.2 NC_006273.1 + 200718 0.66 0.694001
Target:  5'- cGCUGcUCGGCucCGCUCACCGCU-CCgGu -3'
miRNA:   3'- uCGGU-AGCCG--GCGGGUGGCGAuGGgC- -5'
29768 5' -63.2 NC_006273.1 + 199481 0.67 0.637392
Target:  5'- gGGUCGUUGGCUcccgcugugcuGgCCGCCGCUGCaCGg -3'
miRNA:   3'- -UCGGUAGCCGG-----------CgGGUGGCGAUGgGC- -5'
29768 5' -63.2 NC_006273.1 + 198923 0.68 0.571259
Target:  5'- cGCCAgccCGaGCCGCUaagGCCGCaUGCCCc -3'
miRNA:   3'- uCGGUa--GC-CGGCGGg--UGGCG-AUGGGc -5'
29768 5' -63.2 NC_006273.1 + 198729 0.74 0.284463
Target:  5'- gAGUCGUCGGCUaCCCGCCGCcagGCCa- -3'
miRNA:   3'- -UCGGUAGCCGGcGGGUGGCGa--UGGgc -5'
29768 5' -63.2 NC_006273.1 + 198619 0.71 0.424201
Target:  5'- gGGCCucggcgugcucaGGCCaCCCGCCGgaGCCCGg -3'
miRNA:   3'- -UCGGuag---------CCGGcGGGUGGCgaUGGGC- -5'
29768 5' -63.2 NC_006273.1 + 198565 0.67 0.646874
Target:  5'- uGCCAagGGCaUGaUCCGCUGCgACCCGg -3'
miRNA:   3'- uCGGUagCCG-GC-GGGUGGCGaUGGGC- -5'
29768 5' -63.2 NC_006273.1 + 198250 0.7 0.471519
Target:  5'- aGGCCA-CGGCCGCCagcaccuCCGCgGCCg- -3'
miRNA:   3'- -UCGGUaGCCGGCGGgu-----GGCGaUGGgc -5'
29768 5' -63.2 NC_006273.1 + 198181 0.72 0.351558
Target:  5'- cGCgCGUCGGCCGCgucgcaaaCGCUGCUugguACCCGa -3'
miRNA:   3'- uCG-GUAGCCGGCGg-------GUGGCGA----UGGGC- -5'
29768 5' -63.2 NC_006273.1 + 197305 0.72 0.344367
Target:  5'- cGCCGccgaGGCCGCgCggcgGCUGCUGCCCGa -3'
miRNA:   3'- uCGGUag--CCGGCGgG----UGGCGAUGGGC- -5'
29768 5' -63.2 NC_006273.1 + 196217 0.72 0.366255
Target:  5'- cGCCGcUCGGa-GCaCCGCCGCaGCCCGg -3'
miRNA:   3'- uCGGU-AGCCggCG-GGUGGCGaUGGGC- -5'
29768 5' -63.2 NC_006273.1 + 195553 0.67 0.618424
Target:  5'- cGGCUcgCcGCCGCgCCACaCGCUgaGCCCc -3'
miRNA:   3'- -UCGGuaGcCGGCG-GGUG-GCGA--UGGGc -5'
29768 5' -63.2 NC_006273.1 + 195342 0.67 0.665802
Target:  5'- cGCCGUC-GCCGuaCCCACCGCaGCacaCGc -3'
miRNA:   3'- uCGGUAGcCGGC--GGGUGGCGaUGg--GC- -5'
29768 5' -63.2 NC_006273.1 + 194521 0.66 0.703321
Target:  5'- cGCCGUC-GCCGCCCcgaaaagcgaAgCGCUGCgCa -3'
miRNA:   3'- uCGGUAGcCGGCGGG----------UgGCGAUGgGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.