miRNA display CGI


Results 41 - 60 of 214 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29768 5' -63.2 NC_006273.1 + 193966 0.69 0.49527
Target:  5'- cGGUCAaCGGUaacuCGCCCugggcuccgacggcGCCGUUGCCCGg -3'
miRNA:   3'- -UCGGUaGCCG----GCGGG--------------UGGCGAUGGGC- -5'
29768 5' -63.2 NC_006273.1 + 193160 0.72 0.351558
Target:  5'- uGGCac-CGGCCGCCgAagcccaCGCUGCCCGu -3'
miRNA:   3'- -UCGguaGCCGGCGGgUg-----GCGAUGGGC- -5'
29768 5' -63.2 NC_006273.1 + 192546 0.69 0.534156
Target:  5'- cAGCCAUCGGCCagacggaaCCCAUCGCcuuugUGCaCCu -3'
miRNA:   3'- -UCGGUAGCCGGc-------GGGUGGCG-----AUG-GGc -5'
29768 5' -63.2 NC_006273.1 + 191461 0.67 0.660131
Target:  5'- uGGUCGUUGGCCugaugguggaagucgGCgCCGCCGCcGCuuGg -3'
miRNA:   3'- -UCGGUAGCCGG---------------CG-GGUGGCGaUGggC- -5'
29768 5' -63.2 NC_006273.1 + 190879 0.66 0.71259
Target:  5'- cGCCGaCGuGCgCGCgugugucucaCCGCCGCUcGCCCGu -3'
miRNA:   3'- uCGGUaGC-CG-GCG----------GGUGGCGA-UGGGC- -5'
29768 5' -63.2 NC_006273.1 + 189900 0.67 0.622216
Target:  5'- cGCCGUCGGCUGCgacggugguugugaaCuCACCGUcgGCUCGc -3'
miRNA:   3'- uCGGUAGCCGGCG---------------G-GUGGCGa-UGGGC- -5'
29768 5' -63.2 NC_006273.1 + 189800 0.68 0.549833
Target:  5'- cGGCCAU-GGCCGCCUgcacggcagcuuguACCGCcucgGCCaCGc -3'
miRNA:   3'- -UCGGUAgCCGGCGGG--------------UGGCGa---UGG-GC- -5'
29768 5' -63.2 NC_006273.1 + 186238 0.69 0.497942
Target:  5'- cGCCAUgGacGCCGUCUACCGuCUGgCCGa -3'
miRNA:   3'- uCGGUAgC--CGGCGGGUGGC-GAUgGGC- -5'
29768 5' -63.2 NC_006273.1 + 185994 0.66 0.674293
Target:  5'- aAGCCgaaaacgacgaggGUCGGCaggGCacuaCCGCCGCUGCCg- -3'
miRNA:   3'- -UCGG-------------UAGCCGg--CG----GGUGGCGAUGGgc -5'
29768 5' -63.2 NC_006273.1 + 179596 1.07 0.00145
Target:  5'- aAGCCAUCGGCCGCCCACCGCUACCCGu -3'
miRNA:   3'- -UCGGUAGCCGGCGGGUGGCGAUGGGC- -5'
29768 5' -63.2 NC_006273.1 + 179250 0.69 0.543359
Target:  5'- --gCGUCGGUCGCCgccuCCGCgGCCCGu -3'
miRNA:   3'- ucgGUAGCCGGCGGgu--GGCGaUGGGC- -5'
29768 5' -63.2 NC_006273.1 + 174308 0.67 0.665802
Target:  5'- gGGCuCGgaugUGGaaGCuCCGCCGCUACCgGa -3'
miRNA:   3'- -UCG-GUa---GCCggCG-GGUGGCGAUGGgC- -5'
29768 5' -63.2 NC_006273.1 + 174113 0.72 0.361801
Target:  5'- cGGCC-UCGGCCGCgCgCGCCGCgcugcaguggcuggACCUGg -3'
miRNA:   3'- -UCGGuAGCCGGCG-G-GUGGCGa-------------UGGGC- -5'
29768 5' -63.2 NC_006273.1 + 173787 0.67 0.653506
Target:  5'- cGCCAUcauggacgcgcgcgCGGUgGCCaaacgGCCGCgcgACCCGg -3'
miRNA:   3'- uCGGUA--------------GCCGgCGGg----UGGCGa--UGGGC- -5'
29768 5' -63.2 NC_006273.1 + 173729 0.66 0.71259
Target:  5'- uGUCcgUGGCCcguGCCCGCaGCUGCUCu -3'
miRNA:   3'- uCGGuaGCCGG---CGGGUGgCGAUGGGc -5'
29768 5' -63.2 NC_006273.1 + 171119 0.76 0.2228
Target:  5'- cGCCAuccgcuUCGGCCG-CCGCCGCaacGCCCGu -3'
miRNA:   3'- uCGGU------AGCCGGCgGGUGGCGa--UGGGC- -5'
29768 5' -63.2 NC_006273.1 + 170868 0.66 0.7218
Target:  5'- aAG-CAUCGGCCGUgCGCUGC-GCCa- -3'
miRNA:   3'- -UCgGUAGCCGGCGgGUGGCGaUGGgc -5'
29768 5' -63.2 NC_006273.1 + 169684 0.66 0.675235
Target:  5'- uGGCCGUU-GCCGCguuagCGCCGCUuucgguACCCGc -3'
miRNA:   3'- -UCGGUAGcCGGCGg----GUGGCGA------UGGGC- -5'
29768 5' -63.2 NC_006273.1 + 168606 0.71 0.412821
Target:  5'- aGGCCAgugucaGcGCCGagCCGCgGCUGCCCGg -3'
miRNA:   3'- -UCGGUag----C-CGGCg-GGUGgCGAUGGGC- -5'
29768 5' -63.2 NC_006273.1 + 165251 0.65 0.728207
Target:  5'- gAGCCAUCGccgcacucgcuguaGCCGCgcaUCACCGUcAUCCa -3'
miRNA:   3'- -UCGGUAGC--------------CGGCG---GGUGGCGaUGGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.