miRNA display CGI


Results 61 - 80 of 214 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29768 5' -63.2 NC_006273.1 + 164580 0.66 0.7218
Target:  5'- aGGCCA--GGCCGCUgG-CGCUGCCg- -3'
miRNA:   3'- -UCGGUagCCGGCGGgUgGCGAUGGgc -5'
29768 5' -63.2 NC_006273.1 + 163847 0.66 0.694001
Target:  5'- cGCCGgcagCGGCCGCCgGCgaggGCCCu -3'
miRNA:   3'- uCGGUa---GCCGGCGGgUGgcgaUGGGc -5'
29768 5' -63.2 NC_006273.1 + 162915 0.67 0.61558
Target:  5'- cGCCGUgacggacgUGGCCGCCggCACCGacggugcguuacuuCUACCCa -3'
miRNA:   3'- uCGGUA--------GCCGGCGG--GUGGC--------------GAUGGGc -5'
29768 5' -63.2 NC_006273.1 + 162811 0.68 0.608949
Target:  5'- cAGCCG-CGGUCGCCgcaGCUGCgggGCCUc -3'
miRNA:   3'- -UCGGUaGCCGGCGGg--UGGCGa--UGGGc -5'
29768 5' -63.2 NC_006273.1 + 162198 0.67 0.656347
Target:  5'- uGGUgAUCGGCCGCggugCGCUGCaGCCgGa -3'
miRNA:   3'- -UCGgUAGCCGGCGg---GUGGCGaUGGgC- -5'
29768 5' -63.2 NC_006273.1 + 161998 0.76 0.198739
Target:  5'- gGGCCGU-GGCUGCCCGCgCGCUuugcgacucuggGCCCGc -3'
miRNA:   3'- -UCGGUAgCCGGCGGGUG-GCGA------------UGGGC- -5'
29768 5' -63.2 NC_006273.1 + 161648 0.79 0.133188
Target:  5'- gGGCC-UCGGCCG-CCGCCGCcACCCa -3'
miRNA:   3'- -UCGGuAGCCGGCgGGUGGCGaUGGGc -5'
29768 5' -63.2 NC_006273.1 + 158771 0.66 0.71259
Target:  5'- cGCCGUCGacGCCGCUCagGCCGUgauagUCCGa -3'
miRNA:   3'- uCGGUAGC--CGGCGGG--UGGCGau---GGGC- -5'
29768 5' -63.2 NC_006273.1 + 158760 0.67 0.656347
Target:  5'- aAGaCAagaGGCCGCCgGCCGCgGCCaCGg -3'
miRNA:   3'- -UCgGUag-CCGGCGGgUGGCGaUGG-GC- -5'
29768 5' -63.2 NC_006273.1 + 156807 0.68 0.590052
Target:  5'- aAGCgAUUGGCgGCCCGuucugaggaGCUACCCu -3'
miRNA:   3'- -UCGgUAGCCGgCGGGUgg-------CGAUGGGc -5'
29768 5' -63.2 NC_006273.1 + 155152 0.66 0.720882
Target:  5'- uGCCGagGGCCGCgCCcagguagGCCGUUACUg- -3'
miRNA:   3'- uCGGUagCCGGCG-GG-------UGGCGAUGGgc -5'
29768 5' -63.2 NC_006273.1 + 154997 0.67 0.656347
Target:  5'- cGCCG-CuGCCGCcgccacggCCGCCGCU-CCCGc -3'
miRNA:   3'- uCGGUaGcCGGCG--------GGUGGCGAuGGGC- -5'
29768 5' -63.2 NC_006273.1 + 154436 0.68 0.58064
Target:  5'- cAGCUcgUGGCCGCgCUAUCGaUGCCUGu -3'
miRNA:   3'- -UCGGuaGCCGGCG-GGUGGCgAUGGGC- -5'
29768 5' -63.2 NC_006273.1 + 154234 0.71 0.412015
Target:  5'- cGCUucgugCGGCCGCCCAgcuccauCCGCaACCCc -3'
miRNA:   3'- uCGGua---GCCGGCGGGU-------GGCGaUGGGc -5'
29768 5' -63.2 NC_006273.1 + 153776 0.73 0.316674
Target:  5'- aGGCCGcuUCGGCC-UCCGCCGCgGCCgCGg -3'
miRNA:   3'- -UCGGU--AGCCGGcGGGUGGCGaUGG-GC- -5'
29768 5' -63.2 NC_006273.1 + 152603 0.69 0.525009
Target:  5'- cGCCAgcgggugugucUCGGUgGCCCGCUGCacgGCCgCGc -3'
miRNA:   3'- uCGGU-----------AGCCGgCGGGUGGCGa--UGG-GC- -5'
29768 5' -63.2 NC_006273.1 + 152425 0.68 0.59949
Target:  5'- aAGCCAgcgguUCGGCCGCCacguacaaGCggaugUGCUugCCGc -3'
miRNA:   3'- -UCGGU-----AGCCGGCGGg-------UG-----GCGAugGGC- -5'
29768 5' -63.2 NC_006273.1 + 151204 0.66 0.7218
Target:  5'- gGGCCuccauuucgaaAUCGGCCgacacgcucuggGCCgCGCCGCUcCUCGu -3'
miRNA:   3'- -UCGG-----------UAGCCGG------------CGG-GUGGCGAuGGGC- -5'
29768 5' -63.2 NC_006273.1 + 148846 0.69 0.497942
Target:  5'- cGUCGcUGGCUGUugCCGCCGCUGCCgCGu -3'
miRNA:   3'- uCGGUaGCCGGCG--GGUGGCGAUGG-GC- -5'
29768 5' -63.2 NC_006273.1 + 145410 0.67 0.656347
Target:  5'- uGGCCggCGGUCGCguuuuCCACUGCgaccacauCCCGc -3'
miRNA:   3'- -UCGGuaGCCGGCG-----GGUGGCGau------GGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.