miRNA display CGI


Results 81 - 100 of 214 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29768 5' -63.2 NC_006273.1 + 144914 0.71 0.420931
Target:  5'- cGCCcgCucaaGCCGCCCgaACCGCUGCgCGa -3'
miRNA:   3'- uCGGuaGc---CGGCGGG--UGGCGAUGgGC- -5'
29768 5' -63.2 NC_006273.1 + 141807 0.71 0.396895
Target:  5'- aGGCCGcgcaGGCCG-CCGCCGCUcaaguuGCCCa -3'
miRNA:   3'- -UCGGUag--CCGGCgGGUGGCGA------UGGGc -5'
29768 5' -63.2 NC_006273.1 + 140983 0.66 0.674293
Target:  5'- cGGCCGaggUCcggagcgGGCCGCgC-CCGgUGCCCGg -3'
miRNA:   3'- -UCGGU---AG-------CCGGCGgGuGGCgAUGGGC- -5'
29768 5' -63.2 NC_006273.1 + 140662 0.67 0.614633
Target:  5'- gAGCUGggugggggaucccCGGUCGCCCACCGCggaacgaGCCUa -3'
miRNA:   3'- -UCGGUa------------GCCGGCGGGUGGCGa------UGGGc -5'
29768 5' -63.2 NC_006273.1 + 140578 0.8 0.12096
Target:  5'- cGUCGUCGGCCGaCCGCCGCgACCCc -3'
miRNA:   3'- uCGGUAGCCGGCgGGUGGCGaUGGGc -5'
29768 5' -63.2 NC_006273.1 + 140520 0.66 0.703321
Target:  5'- uGCCGUCGagccggggcGUCGCCCguccccaccACCGUccACCCGg -3'
miRNA:   3'- uCGGUAGC---------CGGCGGG---------UGGCGa-UGGGC- -5'
29768 5' -63.2 NC_006273.1 + 140449 0.69 0.515921
Target:  5'- aAGCCGUcgCGGUCGaCC-CCGCU-CCCGa -3'
miRNA:   3'- -UCGGUA--GCCGGCgGGuGGCGAuGGGC- -5'
29768 5' -63.2 NC_006273.1 + 140405 0.66 0.7218
Target:  5'- gAGCCcaacCGgaGCCGCcgagagggagCCGCCGCgagACCCGg -3'
miRNA:   3'- -UCGGua--GC--CGGCG----------GGUGGCGa--UGGGC- -5'
29768 5' -63.2 NC_006273.1 + 140084 0.71 0.396895
Target:  5'- uGUCAU-GGCgGCCCACCGUcgACCCc -3'
miRNA:   3'- uCGGUAgCCGgCGGGUGGCGa-UGGGc -5'
29768 5' -63.2 NC_006273.1 + 135182 0.66 0.7218
Target:  5'- cGCCAUgGGUa-CCUACCGCUGCg-- -3'
miRNA:   3'- uCGGUAgCCGgcGGGUGGCGAUGggc -5'
29768 5' -63.2 NC_006273.1 + 134430 0.67 0.637392
Target:  5'- cGCCcggcauaaacauGUUGGCCGUCUugCGC-ACCUGc -3'
miRNA:   3'- uCGG------------UAGCCGGCGGGugGCGaUGGGC- -5'
29768 5' -63.2 NC_006273.1 + 134217 0.72 0.351558
Target:  5'- cGCCuaCGGCCGCCaCGCCcgUGCCCGa -3'
miRNA:   3'- uCGGuaGCCGGCGG-GUGGcgAUGGGC- -5'
29768 5' -63.2 NC_006273.1 + 133295 0.69 0.525009
Target:  5'- cGGCuCGUCGucacCCGCguguggCCGCCGCUGCUCGa -3'
miRNA:   3'- -UCG-GUAGCc---GGCG------GGUGGCGAUGGGC- -5'
29768 5' -63.2 NC_006273.1 + 132992 0.68 0.590052
Target:  5'- -uUCAUCGuGCCcgacGCCUACCGCgaacACCCGc -3'
miRNA:   3'- ucGGUAGC-CGG----CGGGUGGCGa---UGGGC- -5'
29768 5' -63.2 NC_006273.1 + 132359 0.71 0.420931
Target:  5'- aAGCCG-CGGCCGCugCCGCCGCggcguuucgUCCGg -3'
miRNA:   3'- -UCGGUaGCCGGCG--GGUGGCGau-------GGGC- -5'
29768 5' -63.2 NC_006273.1 + 132087 0.66 0.684636
Target:  5'- gAGCCcgCGcuggcaccGCUGCUggagcgACCGCUGCCCGu -3'
miRNA:   3'- -UCGGuaGC--------CGGCGGg-----UGGCGAUGGGC- -5'
29768 5' -63.2 NC_006273.1 + 131099 0.68 0.584401
Target:  5'- aGGCCGagacgCGGCCGCUCuaccggcaucucuuCCGCacGCCCGu -3'
miRNA:   3'- -UCGGUa----GCCGGCGGGu-------------GGCGa-UGGGC- -5'
29768 5' -63.2 NC_006273.1 + 130503 0.7 0.457719
Target:  5'- -uCCAccUCGGCCGCCgGCCGCgugugaggcaaacaGCCCu -3'
miRNA:   3'- ucGGU--AGCCGGCGGgUGGCGa-------------UGGGc -5'
29768 5' -63.2 NC_006273.1 + 130095 0.68 0.58064
Target:  5'- cGCUAU-GGCCuGCCUGCCGCgcgACCUc -3'
miRNA:   3'- uCGGUAgCCGG-CGGGUGGCGa--UGGGc -5'
29768 5' -63.2 NC_006273.1 + 129576 0.68 0.608949
Target:  5'- uAGUCGUCGGCgGCuCCGCUauGCcGCgCCGg -3'
miRNA:   3'- -UCGGUAGCCGgCG-GGUGG--CGaUG-GGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.