miRNA display CGI


Results 1 - 20 of 214 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29768 5' -63.2 NC_006273.1 + 24167 0.7 0.489059
Target:  5'- uGGCUAacgucUCGGCgGCCUACCccacCUACCUGg -3'
miRNA:   3'- -UCGGU-----AGCCGgCGGGUGGc---GAUGGGC- -5'
29768 5' -63.2 NC_006273.1 + 22277 0.71 0.429136
Target:  5'- cGCCGUCGGUgCGCUCAuCUGCggcagcggUACCCGa -3'
miRNA:   3'- uCGGUAGCCG-GCGGGU-GGCG--------AUGGGC- -5'
29768 5' -63.2 NC_006273.1 + 233185 0.7 0.443298
Target:  5'- cGCCGUCGGaCCcaccaucaccgucgGCgCCGCCGCUGCugCCGc -3'
miRNA:   3'- uCGGUAGCC-GG--------------CG-GGUGGCGAUG--GGC- -5'
29768 5' -63.2 NC_006273.1 + 95200 0.7 0.443298
Target:  5'- -cCCAUCGGCCGCCCAgCCGgggucggcgccucggACCCc -3'
miRNA:   3'- ucGGUAGCCGGCGGGU-GGCga-------------UGGGc -5'
29768 5' -63.2 NC_006273.1 + 4523 0.7 0.445825
Target:  5'- aAGCCGacCGGCCGCCgAcCCGUUcCCCa -3'
miRNA:   3'- -UCGGUa-GCCGGCGGgU-GGCGAuGGGc -5'
29768 5' -63.2 NC_006273.1 + 46413 0.7 0.445825
Target:  5'- gAGCCccAUCGG--GCCCGCCaCUGCCCGu -3'
miRNA:   3'- -UCGG--UAGCCggCGGGUGGcGAUGGGC- -5'
29768 5' -63.2 NC_006273.1 + 73567 0.7 0.453451
Target:  5'- aGGCCGacgcgCGGaCCcuccgauguccugGCCCGCCGCUGCCg- -3'
miRNA:   3'- -UCGGUa----GCC-GG-------------CGGGUGGCGAUGGgc -5'
29768 5' -63.2 NC_006273.1 + 198250 0.7 0.471519
Target:  5'- aGGCCA-CGGCCGCCagcaccuCCGCgGCCg- -3'
miRNA:   3'- -UCGGUaGCCGGCGGgu-----GGCGaUGGgc -5'
29768 5' -63.2 NC_006273.1 + 49651 0.7 0.48025
Target:  5'- aGGUCAUCGuagcaguagauGCCGCCg--CGCUGCCCGa -3'
miRNA:   3'- -UCGGUAGC-----------CGGCGGgugGCGAUGGGC- -5'
29768 5' -63.2 NC_006273.1 + 198619 0.71 0.424201
Target:  5'- gGGCCucggcgugcucaGGCCaCCCGCCGgaGCCCGg -3'
miRNA:   3'- -UCGGuag---------CCGGcGGGUGGCgaUGGGC- -5'
29768 5' -63.2 NC_006273.1 + 144914 0.71 0.420931
Target:  5'- cGCCcgCucaaGCCGCCCgaACCGCUGCgCGa -3'
miRNA:   3'- uCGGuaGc---CGGCGGG--UGGCGAUGgGC- -5'
29768 5' -63.2 NC_006273.1 + 132359 0.71 0.420931
Target:  5'- aAGCCG-CGGCCGCugCCGCCGCggcguuucgUCCGg -3'
miRNA:   3'- -UCGGUaGCCGGCG--GGUGGCGau-------GGGC- -5'
29768 5' -63.2 NC_006273.1 + 198729 0.74 0.284463
Target:  5'- gAGUCGUCGGCUaCCCGCCGCcagGCCa- -3'
miRNA:   3'- -UCGGUAGCCGGcGGGUGGCGa--UGGgc -5'
29768 5' -63.2 NC_006273.1 + 153776 0.73 0.316674
Target:  5'- aGGCCGcuUCGGCC-UCCGCCGCgGCCgCGg -3'
miRNA:   3'- -UCGGU--AGCCGGcGGGUGGCGaUGG-GC- -5'
29768 5' -63.2 NC_006273.1 + 197305 0.72 0.344367
Target:  5'- cGCCGccgaGGCCGCgCggcgGCUGCUGCCCGa -3'
miRNA:   3'- uCGGUag--CCGGCGgG----UGGCGAUGGGC- -5'
29768 5' -63.2 NC_006273.1 + 134217 0.72 0.351558
Target:  5'- cGCCuaCGGCCGCCaCGCCcgUGCCCGa -3'
miRNA:   3'- uCGGuaGCCGGCGG-GUGGcgAUGGGC- -5'
29768 5' -63.2 NC_006273.1 + 141807 0.71 0.396895
Target:  5'- aGGCCGcgcaGGCCG-CCGCCGCUcaaguuGCCCa -3'
miRNA:   3'- -UCGGUag--CCGGCgGGUGGCGA------UGGGc -5'
29768 5' -63.2 NC_006273.1 + 154234 0.71 0.412015
Target:  5'- cGCUucgugCGGCCGCCCAgcuccauCCGCaACCCc -3'
miRNA:   3'- uCGGua---GCCGGCGGGU-------GGCGaUGGGc -5'
29768 5' -63.2 NC_006273.1 + 204709 0.71 0.412821
Target:  5'- cGCCGgcaccgCGGCCGgCCGCaggaaGCcGCCCGg -3'
miRNA:   3'- uCGGUa-----GCCGGCgGGUGg----CGaUGGGC- -5'
29768 5' -63.2 NC_006273.1 + 233644 0.71 0.412821
Target:  5'- -aCCGUCGuGCCgGCCCACCGCcggcgcagcuCCCGu -3'
miRNA:   3'- ucGGUAGC-CGG-CGGGUGGCGau--------GGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.