Results 41 - 60 of 214 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29768 | 5' | -63.2 | NC_006273.1 | + | 141807 | 0.71 | 0.396895 |
Target: 5'- aGGCCGcgcaGGCCG-CCGCCGCUcaaguuGCCCa -3' miRNA: 3'- -UCGGUag--CCGGCgGGUGGCGA------UGGGc -5' |
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29768 | 5' | -63.2 | NC_006273.1 | + | 134217 | 0.72 | 0.351558 |
Target: 5'- cGCCuaCGGCCGCCaCGCCcgUGCCCGa -3' miRNA: 3'- uCGGuaGCCGGCGG-GUGGcgAUGGGC- -5' |
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29768 | 5' | -63.2 | NC_006273.1 | + | 197305 | 0.72 | 0.344367 |
Target: 5'- cGCCGccgaGGCCGCgCggcgGCUGCUGCCCGa -3' miRNA: 3'- uCGGUag--CCGGCGgG----UGGCGAUGGGC- -5' |
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29768 | 5' | -63.2 | NC_006273.1 | + | 153776 | 0.73 | 0.316674 |
Target: 5'- aGGCCGcuUCGGCC-UCCGCCGCgGCCgCGg -3' miRNA: 3'- -UCGGU--AGCCGGcGGGUGGCGaUGG-GC- -5' |
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29768 | 5' | -63.2 | NC_006273.1 | + | 198729 | 0.74 | 0.284463 |
Target: 5'- gAGUCGUCGGCUaCCCGCCGCcagGCCa- -3' miRNA: 3'- -UCGGUAGCCGGcGGGUGGCGa--UGGgc -5' |
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29768 | 5' | -63.2 | NC_006273.1 | + | 95200 | 0.7 | 0.443298 |
Target: 5'- -cCCAUCGGCCGCCCAgCCGgggucggcgccucggACCCc -3' miRNA: 3'- ucGGUAGCCGGCGGGU-GGCga-------------UGGGc -5' |
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29768 | 5' | -63.2 | NC_006273.1 | + | 4523 | 0.7 | 0.445825 |
Target: 5'- aAGCCGacCGGCCGCCgAcCCGUUcCCCa -3' miRNA: 3'- -UCGGUa-GCCGGCGGgU-GGCGAuGGGc -5' |
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29768 | 5' | -63.2 | NC_006273.1 | + | 152603 | 0.69 | 0.525009 |
Target: 5'- cGCCAgcgggugugucUCGGUgGCCCGCUGCacgGCCgCGc -3' miRNA: 3'- uCGGU-----------AGCCGgCGGGUGGCGa--UGG-GC- -5' |
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29768 | 5' | -63.2 | NC_006273.1 | + | 94382 | 0.69 | 0.525009 |
Target: 5'- gGGCCGUgGGCCGggCACCggGCgcgGCCCGc -3' miRNA: 3'- -UCGGUAgCCGGCggGUGG--CGa--UGGGC- -5' |
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29768 | 5' | -63.2 | NC_006273.1 | + | 85826 | 0.69 | 0.525009 |
Target: 5'- cGGCC--CGGCCGCcgCCACCGUUAUUCc -3' miRNA: 3'- -UCGGuaGCCGGCG--GGUGGCGAUGGGc -5' |
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29768 | 5' | -63.2 | NC_006273.1 | + | 233382 | 0.69 | 0.522276 |
Target: 5'- cGGCCuccgucucCGuGCCGCUCGCCGCUGgcggcgacgucgucCCCGu -3' miRNA: 3'- -UCGGua------GC-CGGCGGGUGGCGAU--------------GGGC- -5' |
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29768 | 5' | -63.2 | NC_006273.1 | + | 117570 | 0.69 | 0.513207 |
Target: 5'- cGCCGUagCGGCCccuccuucugcuucGCCagCACCGCUGCCUu -3' miRNA: 3'- uCGGUA--GCCGG--------------CGG--GUGGCGAUGGGc -5' |
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29768 | 5' | -63.2 | NC_006273.1 | + | 234317 | 0.69 | 0.506898 |
Target: 5'- cGCC--CGGCgGCCCGCgGgguuCUACCCGg -3' miRNA: 3'- uCGGuaGCCGgCGGGUGgC----GAUGGGC- -5' |
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29768 | 5' | -63.2 | NC_006273.1 | + | 233236 | 0.69 | 0.506898 |
Target: 5'- cGCCGUCGcGuCCGCCCcgaccACCGCgUGCgCGu -3' miRNA: 3'- uCGGUAGC-C-GGCGGG-----UGGCG-AUGgGC- -5' |
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29768 | 5' | -63.2 | NC_006273.1 | + | 148846 | 0.69 | 0.497942 |
Target: 5'- cGUCGcUGGCUGUugCCGCCGCUGCCgCGu -3' miRNA: 3'- uCGGUaGCCGGCG--GGUGGCGAUGG-GC- -5' |
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29768 | 5' | -63.2 | NC_006273.1 | + | 24167 | 0.7 | 0.489059 |
Target: 5'- uGGCUAacgucUCGGCgGCCUACCccacCUACCUGg -3' miRNA: 3'- -UCGGU-----AGCCGgCGGGUGGc---GAUGGGC- -5' |
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29768 | 5' | -63.2 | NC_006273.1 | + | 49651 | 0.7 | 0.48025 |
Target: 5'- aGGUCAUCGuagcaguagauGCCGCCg--CGCUGCCCGa -3' miRNA: 3'- -UCGGUAGC-----------CGGCGGgugGCGAUGGGC- -5' |
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29768 | 5' | -63.2 | NC_006273.1 | + | 198250 | 0.7 | 0.471519 |
Target: 5'- aGGCCA-CGGCCGCCagcaccuCCGCgGCCg- -3' miRNA: 3'- -UCGGUaGCCGGCGGgu-----GGCGaUGGgc -5' |
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29768 | 5' | -63.2 | NC_006273.1 | + | 73567 | 0.7 | 0.453451 |
Target: 5'- aGGCCGacgcgCGGaCCcuccgauguccugGCCCGCCGCUGCCg- -3' miRNA: 3'- -UCGGUa----GCC-GG-------------CGGGUGGCGAUGGgc -5' |
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29768 | 5' | -63.2 | NC_006273.1 | + | 46413 | 0.7 | 0.445825 |
Target: 5'- gAGCCccAUCGG--GCCCGCCaCUGCCCGu -3' miRNA: 3'- -UCGG--UAGCCggCGGGUGGcGAUGGGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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