miRNA display CGI


Results 61 - 80 of 214 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29768 5' -63.2 NC_006273.1 + 49651 0.7 0.48025
Target:  5'- aGGUCAUCGuagcaguagauGCCGCCg--CGCUGCCCGa -3'
miRNA:   3'- -UCGGUAGC-----------CGGCGGgugGCGAUGGGC- -5'
29768 5' -63.2 NC_006273.1 + 24167 0.7 0.489059
Target:  5'- uGGCUAacgucUCGGCgGCCUACCccacCUACCUGg -3'
miRNA:   3'- -UCGGU-----AGCCGgCGGGUGGc---GAUGGGC- -5'
29768 5' -63.2 NC_006273.1 + 38332 0.69 0.543359
Target:  5'- uGUCGUC-GCCGCCaccgucguCGCCGCUGCCg- -3'
miRNA:   3'- uCGGUAGcCGGCGG--------GUGGCGAUGGgc -5'
29768 5' -63.2 NC_006273.1 + 189800 0.68 0.549833
Target:  5'- cGGCCAU-GGCCGCCUgcacggcagcuuguACCGCcucgGCCaCGc -3'
miRNA:   3'- -UCGGUAgCCGGCGGG--------------UGGCGa---UGG-GC- -5'
29768 5' -63.2 NC_006273.1 + 21697 0.68 0.552614
Target:  5'- cGCCAcUCGGaCCGCUC-CUGCgACCUGg -3'
miRNA:   3'- uCGGU-AGCC-GGCGGGuGGCGaUGGGC- -5'
29768 5' -63.2 NC_006273.1 + 41922 0.68 0.552614
Target:  5'- cGCCAccacuagCGG-CGCCCuuGCCGCUAguuCCCGg -3'
miRNA:   3'- uCGGUa------GCCgGCGGG--UGGCGAU---GGGC- -5'
29768 5' -63.2 NC_006273.1 + 82526 0.68 0.552614
Target:  5'- cGCCAaCGGCCuuuCCCGCgGC-GCCCa -3'
miRNA:   3'- uCGGUaGCCGGc--GGGUGgCGaUGGGc -5'
29768 5' -63.2 NC_006273.1 + 32655 0.68 0.552614
Target:  5'- uGGCCGUCGG-CGUCgCGUCGCagGCCCGa -3'
miRNA:   3'- -UCGGUAGCCgGCGG-GUGGCGa-UGGGC- -5'
29768 5' -63.2 NC_006273.1 + 56654 0.68 0.561916
Target:  5'- cGUgGUCGugaucaccGCCGCcgCCACCGCUGCUCa -3'
miRNA:   3'- uCGgUAGC--------CGGCG--GGUGGCGAUGGGc -5'
29768 5' -63.2 NC_006273.1 + 198923 0.68 0.571259
Target:  5'- cGCCAgccCGaGCCGCUaagGCCGCaUGCCCc -3'
miRNA:   3'- uCGGUa--GC-CGGCGGg--UGGCG-AUGGGc -5'
29768 5' -63.2 NC_006273.1 + 93938 0.69 0.53049
Target:  5'- gGGCCAggacccgcgggaGGCgCGCCCugCGCaUGCgCCGg -3'
miRNA:   3'- -UCGGUag----------CCG-GCGGGugGCG-AUG-GGC- -5'
29768 5' -63.2 NC_006273.1 + 118387 0.69 0.525009
Target:  5'- cGGCUaguGUCGuguuaGCCG-CCGCUGCUGCCCa -3'
miRNA:   3'- -UCGG---UAGC-----CGGCgGGUGGCGAUGGGc -5'
29768 5' -63.2 NC_006273.1 + 148846 0.69 0.497942
Target:  5'- cGUCGcUGGCUGUugCCGCCGCUGCCgCGu -3'
miRNA:   3'- uCGGUaGCCGGCG--GGUGGCGAUGG-GC- -5'
29768 5' -63.2 NC_006273.1 + 233236 0.69 0.506898
Target:  5'- cGCCGUCGcGuCCGCCCcgaccACCGCgUGCgCGu -3'
miRNA:   3'- uCGGUAGC-C-GGCGGG-----UGGCG-AUGgGC- -5'
29768 5' -63.2 NC_006273.1 + 234317 0.69 0.506898
Target:  5'- cGCC--CGGCgGCCCGCgGgguuCUACCCGg -3'
miRNA:   3'- uCGGuaGCCGgCGGGUGgC----GAUGGGC- -5'
29768 5' -63.2 NC_006273.1 + 117570 0.69 0.513207
Target:  5'- cGCCGUagCGGCCccuccuucugcuucGCCagCACCGCUGCCUu -3'
miRNA:   3'- uCGGUA--GCCGG--------------CGG--GUGGCGAUGGGc -5'
29768 5' -63.2 NC_006273.1 + 233382 0.69 0.522276
Target:  5'- cGGCCuccgucucCGuGCCGCUCGCCGCUGgcggcgacgucgucCCCGu -3'
miRNA:   3'- -UCGGua------GC-CGGCGGGUGGCGAU--------------GGGC- -5'
29768 5' -63.2 NC_006273.1 + 85826 0.69 0.525009
Target:  5'- cGGCC--CGGCCGCcgCCACCGUUAUUCc -3'
miRNA:   3'- -UCGGuaGCCGGCG--GGUGGCGAUGGGc -5'
29768 5' -63.2 NC_006273.1 + 94382 0.69 0.525009
Target:  5'- gGGCCGUgGGCCGggCACCggGCgcgGCCCGc -3'
miRNA:   3'- -UCGGUAgCCGGCggGUGG--CGa--UGGGC- -5'
29768 5' -63.2 NC_006273.1 + 152603 0.69 0.525009
Target:  5'- cGCCAgcgggugugucUCGGUgGCCCGCUGCacgGCCgCGc -3'
miRNA:   3'- uCGGU-----------AGCCGgCGGGUGGCGa--UGG-GC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.