Results 81 - 100 of 214 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29768 | 5' | -63.2 | NC_006273.1 | + | 94254 | 0.68 | 0.58064 |
Target: 5'- cGGCCGUgCuGCgGUCCGCaCGCUgcGCCCGc -3' miRNA: 3'- -UCGGUA-GcCGgCGGGUG-GCGA--UGGGC- -5' |
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29768 | 5' | -63.2 | NC_006273.1 | + | 218501 | 0.68 | 0.58064 |
Target: 5'- cAGCC--UGGCCGCgCGCCGCagaCCGu -3' miRNA: 3'- -UCGGuaGCCGGCGgGUGGCGaugGGC- -5' |
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29768 | 5' | -63.2 | NC_006273.1 | + | 68211 | 0.68 | 0.589109 |
Target: 5'- gAGCUggcggGUCGGaucacgcccCCGCCCGCCGaCUuccagcgGCCCGu -3' miRNA: 3'- -UCGG-----UAGCC---------GGCGGGUGGC-GA-------UGGGC- -5' |
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29768 | 5' | -63.2 | NC_006273.1 | + | 32655 | 0.68 | 0.552614 |
Target: 5'- uGGCCGUCGG-CGUCgCGUCGCagGCCCGa -3' miRNA: 3'- -UCGGUAGCCgGCGG-GUGGCGa-UGGGC- -5' |
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29768 | 5' | -63.2 | NC_006273.1 | + | 82526 | 0.68 | 0.552614 |
Target: 5'- cGCCAaCGGCCuuuCCCGCgGC-GCCCa -3' miRNA: 3'- uCGGUaGCCGGc--GGGUGgCGaUGGGc -5' |
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29768 | 5' | -63.2 | NC_006273.1 | + | 233382 | 0.69 | 0.522276 |
Target: 5'- cGGCCuccgucucCGuGCCGCUCGCCGCUGgcggcgacgucgucCCCGu -3' miRNA: 3'- -UCGGua------GC-CGGCGGGUGGCGAU--------------GGGC- -5' |
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29768 | 5' | -63.2 | NC_006273.1 | + | 85826 | 0.69 | 0.525009 |
Target: 5'- cGGCC--CGGCCGCcgCCACCGUUAUUCc -3' miRNA: 3'- -UCGGuaGCCGGCG--GGUGGCGAUGGGc -5' |
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29768 | 5' | -63.2 | NC_006273.1 | + | 94382 | 0.69 | 0.525009 |
Target: 5'- gGGCCGUgGGCCGggCACCggGCgcgGCCCGc -3' miRNA: 3'- -UCGGUAgCCGGCggGUGG--CGa--UGGGC- -5' |
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29768 | 5' | -63.2 | NC_006273.1 | + | 152603 | 0.69 | 0.525009 |
Target: 5'- cGCCAgcgggugugucUCGGUgGCCCGCUGCacgGCCgCGc -3' miRNA: 3'- uCGGU-----------AGCCGgCGGGUGGCGa--UGG-GC- -5' |
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29768 | 5' | -63.2 | NC_006273.1 | + | 118387 | 0.69 | 0.525009 |
Target: 5'- cGGCUaguGUCGuguuaGCCG-CCGCUGCUGCCCa -3' miRNA: 3'- -UCGG---UAGC-----CGGCgGGUGGCGAUGGGc -5' |
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29768 | 5' | -63.2 | NC_006273.1 | + | 93938 | 0.69 | 0.53049 |
Target: 5'- gGGCCAggacccgcgggaGGCgCGCCCugCGCaUGCgCCGg -3' miRNA: 3'- -UCGGUag----------CCG-GCGGGugGCG-AUG-GGC- -5' |
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29768 | 5' | -63.2 | NC_006273.1 | + | 38332 | 0.69 | 0.543359 |
Target: 5'- uGUCGUC-GCCGCCaccgucguCGCCGCUGCCg- -3' miRNA: 3'- uCGGUAGcCGGCGG--------GUGGCGAUGGgc -5' |
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29768 | 5' | -63.2 | NC_006273.1 | + | 189800 | 0.68 | 0.549833 |
Target: 5'- cGGCCAU-GGCCGCCUgcacggcagcuuguACCGCcucgGCCaCGc -3' miRNA: 3'- -UCGGUAgCCGGCGGG--------------UGGCGa---UGG-GC- -5' |
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29768 | 5' | -63.2 | NC_006273.1 | + | 21697 | 0.68 | 0.552614 |
Target: 5'- cGCCAcUCGGaCCGCUC-CUGCgACCUGg -3' miRNA: 3'- uCGGU-AGCC-GGCGGGuGGCGaUGGGC- -5' |
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29768 | 5' | -63.2 | NC_006273.1 | + | 41922 | 0.68 | 0.552614 |
Target: 5'- cGCCAccacuagCGG-CGCCCuuGCCGCUAguuCCCGg -3' miRNA: 3'- uCGGUa------GCCgGCGGG--UGGCGAU---GGGC- -5' |
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29768 | 5' | -63.2 | NC_006273.1 | + | 161998 | 0.76 | 0.198739 |
Target: 5'- gGGCCGU-GGCUGCCCGCgCGCUuugcgacucuggGCCCGc -3' miRNA: 3'- -UCGGUAgCCGGCGGGUG-GCGA------------UGGGC- -5' |
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29768 | 5' | -63.2 | NC_006273.1 | + | 47082 | 0.77 | 0.189765 |
Target: 5'- uGGCCAUCGGCgCGCUCAUCGCgUACUUa -3' miRNA: 3'- -UCGGUAGCCG-GCGGGUGGCG-AUGGGc -5' |
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29768 | 5' | -63.2 | NC_006273.1 | + | 161648 | 0.79 | 0.133188 |
Target: 5'- gGGCC-UCGGCCG-CCGCCGCcACCCa -3' miRNA: 3'- -UCGGuAGCCGGCgGGUGGCGaUGGGc -5' |
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29768 | 5' | -63.2 | NC_006273.1 | + | 140578 | 0.8 | 0.12096 |
Target: 5'- cGUCGUCGGCCGaCCGCCGCgACCCc -3' miRNA: 3'- uCGGUAGCCGGCgGGUGGCGaUGGGc -5' |
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29768 | 5' | -63.2 | NC_006273.1 | + | 99942 | 0.66 | 0.7218 |
Target: 5'- gAGCCcUCGaGCguggagacgagCGCgCAgCCGCUGCCCa -3' miRNA: 3'- -UCGGuAGC-CG-----------GCGgGU-GGCGAUGGGc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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