miRNA display CGI


Results 101 - 120 of 214 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29768 5' -63.2 NC_006273.1 + 140084 0.71 0.396895
Target:  5'- uGUCAU-GGCgGCCCACCGUcgACCCc -3'
miRNA:   3'- uCGGUAgCCGgCGGGUGGCGa-UGGGc -5'
29768 5' -63.2 NC_006273.1 + 201151 0.71 0.412821
Target:  5'- uGCCugcCGGCgGCCCuguGCCGCggguUGCCCGu -3'
miRNA:   3'- uCGGua-GCCGgCGGG---UGGCG----AUGGGC- -5'
29768 5' -63.2 NC_006273.1 + 38752 0.71 0.412821
Target:  5'- -aCCGUCGuGCCgGCCCACCGCcggcgcagcuCCCGu -3'
miRNA:   3'- ucGGUAGC-CGG-CGGGUGGCGau--------GGGC- -5'
29768 5' -63.2 NC_006273.1 + 168606 0.71 0.412821
Target:  5'- aGGCCAgugucaGcGCCGagCCGCgGCUGCCCGg -3'
miRNA:   3'- -UCGGUag----C-CGGCg-GGUGgCGAUGGGC- -5'
29768 5' -63.2 NC_006273.1 + 202148 0.71 0.437435
Target:  5'- cGCCGUCGucGCCGCCCcgggGCCcucggugcGCUACCgGg -3'
miRNA:   3'- uCGGUAGC--CGGCGGG----UGG--------CGAUGGgC- -5'
29768 5' -63.2 NC_006273.1 + 38292 0.7 0.443298
Target:  5'- cGCCGUCGGaCCcaccaucaccgucgGCgCCGCCGCUGCugCCGc -3'
miRNA:   3'- uCGGUAGCC-GG--------------CG-GGUGGCGAUG--GGC- -5'
29768 5' -63.2 NC_006273.1 + 22260 0.7 0.445825
Target:  5'- -aCCAUCGuGCCGCuCCAUCGCaGCCaCGc -3'
miRNA:   3'- ucGGUAGC-CGGCG-GGUGGCGaUGG-GC- -5'
29768 5' -63.2 NC_006273.1 + 2412 0.72 0.344367
Target:  5'- cGCCGccgaGGCCGCgCggcgGCUGCUGCCCGa -3'
miRNA:   3'- uCGGUag--CCGGCGgG----UGGCGAUGGGC- -5'
29768 5' -63.2 NC_006273.1 + 96043 0.72 0.344367
Target:  5'- uGGCCuucugCGGCCG-CCACCGCgacuacaacucGCCCGa -3'
miRNA:   3'- -UCGGua---GCCGGCgGGUGGCGa----------UGGGC- -5'
29768 5' -63.2 NC_006273.1 + 140578 0.8 0.12096
Target:  5'- cGUCGUCGGCCGaCCGCCGCgACCCc -3'
miRNA:   3'- uCGGUAGCCGGCgGGUGGCGaUGGGc -5'
29768 5' -63.2 NC_006273.1 + 161648 0.79 0.133188
Target:  5'- gGGCC-UCGGCCG-CCGCCGCcACCCa -3'
miRNA:   3'- -UCGGuAGCCGGCgGGUGGCGaUGGGc -5'
29768 5' -63.2 NC_006273.1 + 47082 0.77 0.189765
Target:  5'- uGGCCAUCGGCgCGCUCAUCGCgUACUUa -3'
miRNA:   3'- -UCGGUAGCCG-GCGGGUGGCG-AUGGGc -5'
29768 5' -63.2 NC_006273.1 + 161998 0.76 0.198739
Target:  5'- gGGCCGU-GGCUGCCCGCgCGCUuugcgacucuggGCCCGc -3'
miRNA:   3'- -UCGGUAgCCGGCGGGUG-GCGA------------UGGGC- -5'
29768 5' -63.2 NC_006273.1 + 171119 0.76 0.2228
Target:  5'- cGCCAuccgcuUCGGCCG-CCGCCGCaacGCCCGu -3'
miRNA:   3'- uCGGU------AGCCGGCgGGUGGCGa--UGGGC- -5'
29768 5' -63.2 NC_006273.1 + 83381 0.75 0.2279
Target:  5'- gGGCCAcgUCgGGCUGCugCCGCCGCcACCCGg -3'
miRNA:   3'- -UCGGU--AG-CCGGCG--GGUGGCGaUGGGC- -5'
29768 5' -63.2 NC_006273.1 + 41257 0.74 0.290692
Target:  5'- cGCCucagCGGUCGCCCuaucacaaccGCCGCUACUCu -3'
miRNA:   3'- uCGGua--GCCGGCGGG----------UGGCGAUGGGc -5'
29768 5' -63.2 NC_006273.1 + 17185 0.74 0.297027
Target:  5'- cGGUCGUCcGCCGUCgGCCGCcGCCCa -3'
miRNA:   3'- -UCGGUAGcCGGCGGgUGGCGaUGGGc -5'
29768 5' -63.2 NC_006273.1 + 68065 0.73 0.310018
Target:  5'- cGCCGU-GGCCGCcgcugCCGCCGCUguggccggaguGCCCGu -3'
miRNA:   3'- uCGGUAgCCGGCG-----GGUGGCGA-----------UGGGC- -5'
29768 5' -63.2 NC_006273.1 + 21576 0.73 0.323437
Target:  5'- uGcCCGUCGGCUGCCUguuccuGCUGCUACgCGg -3'
miRNA:   3'- uC-GGUAGCCGGCGGG------UGGCGAUGgGC- -5'
29768 5' -63.2 NC_006273.1 + 87852 0.72 0.344367
Target:  5'- cGUCAUCGGCgCGCCCccAUCGCcuCCCGa -3'
miRNA:   3'- uCGGUAGCCG-GCGGG--UGGCGauGGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.