miRNA display CGI


Results 21 - 40 of 214 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29768 5' -63.2 NC_006273.1 + 168606 0.71 0.412821
Target:  5'- aGGCCAgugucaGcGCCGagCCGCgGCUGCCCGg -3'
miRNA:   3'- -UCGGUag----C-CGGCg-GGUGgCGAUGGGC- -5'
29768 5' -63.2 NC_006273.1 + 140084 0.71 0.396895
Target:  5'- uGUCAU-GGCgGCCCACCGUcgACCCc -3'
miRNA:   3'- uCGGUAgCCGgCGGGUGGCGa-UGGGc -5'
29768 5' -63.2 NC_006273.1 + 21576 0.73 0.323437
Target:  5'- uGcCCGUCGGCUGCCUguuccuGCUGCUACgCGg -3'
miRNA:   3'- uC-GGUAGCCGGCGGG------UGGCGAUGgGC- -5'
29768 5' -63.2 NC_006273.1 + 47082 0.77 0.189765
Target:  5'- uGGCCAUCGGCgCGCUCAUCGCgUACUUa -3'
miRNA:   3'- -UCGGUAGCCG-GCGGGUGGCG-AUGGGc -5'
29768 5' -63.2 NC_006273.1 + 186238 0.69 0.497942
Target:  5'- cGCCAUgGacGCCGUCUACCGuCUGgCCGa -3'
miRNA:   3'- uCGGUAgC--CGGCGGGUGGC-GAUgGGC- -5'
29768 5' -63.2 NC_006273.1 + 68202 0.7 0.462869
Target:  5'- cGGCCuccgCGGCCgcugcGCCCGCCGUgGCCa- -3'
miRNA:   3'- -UCGGua--GCCGG-----CGGGUGGCGaUGGgc -5'
29768 5' -63.2 NC_006273.1 + 196217 0.72 0.366255
Target:  5'- cGCCGcUCGGa-GCaCCGCCGCaGCCCGg -3'
miRNA:   3'- uCGGU-AGCCggCG-GGUGGCGaUGGGC- -5'
29768 5' -63.2 NC_006273.1 + 161648 0.79 0.133188
Target:  5'- gGGCC-UCGGCCG-CCGCCGCcACCCa -3'
miRNA:   3'- -UCGGuAGCCGGCgGGUGGCGaUGGGc -5'
29768 5' -63.2 NC_006273.1 + 130503 0.7 0.457719
Target:  5'- -uCCAccUCGGCCGCCgGCCGCgugugaggcaaacaGCCCu -3'
miRNA:   3'- ucGGU--AGCCGGCGGgUGGCGa-------------UGGGc -5'
29768 5' -63.2 NC_006273.1 + 140578 0.8 0.12096
Target:  5'- cGUCGUCGGCCGaCCGCCGCgACCCc -3'
miRNA:   3'- uCGGUAGCCGGCgGGUGGCGaUGGGc -5'
29768 5' -63.2 NC_006273.1 + 73130 0.72 0.37376
Target:  5'- gGGCCGUCGcgaGuCCCGCCGCUGCCa- -3'
miRNA:   3'- -UCGGUAGCcggC-GGGUGGCGAUGGgc -5'
29768 5' -63.2 NC_006273.1 + 202148 0.71 0.437435
Target:  5'- cGCCGUCGucGCCGCCCcgggGCCcucggugcGCUACCgGg -3'
miRNA:   3'- uCGGUAGC--CGGCGGG----UGG--------CGAUGGgC- -5'
29768 5' -63.2 NC_006273.1 + 193160 0.72 0.351558
Target:  5'- uGGCac-CGGCCGCCgAagcccaCGCUGCCCGu -3'
miRNA:   3'- -UCGguaGCCGGCGGgUg-----GCGAUGGGC- -5'
29768 5' -63.2 NC_006273.1 + 87852 0.72 0.344367
Target:  5'- cGUCAUCGGCgCGCCCccAUCGCcuCCCGa -3'
miRNA:   3'- uCGGUAGCCG-GCGGG--UGGCGauGGGC- -5'
29768 5' -63.2 NC_006273.1 + 41257 0.74 0.290692
Target:  5'- cGCCucagCGGUCGCCCuaucacaaccGCCGCUACUCu -3'
miRNA:   3'- uCGGua--GCCGGCGGG----------UGGCGAUGGGc -5'
29768 5' -63.2 NC_006273.1 + 161998 0.76 0.198739
Target:  5'- gGGCCGU-GGCUGCCCGCgCGCUuugcgacucuggGCCCGc -3'
miRNA:   3'- -UCGGUAgCCGGCGGGUG-GCGA------------UGGGC- -5'
29768 5' -63.2 NC_006273.1 + 227690 0.69 0.506898
Target:  5'- uGCCG-CGGCCacugCCGCCGCcGCCCa -3'
miRNA:   3'- uCGGUaGCCGGcg--GGUGGCGaUGGGc -5'
29768 5' -63.2 NC_006273.1 + 5852 0.69 0.506898
Target:  5'- cGCCaAUUGGCgGCCCuCCGUUcgGCUCGg -3'
miRNA:   3'- uCGG-UAGCCGgCGGGuGGCGA--UGGGC- -5'
29768 5' -63.2 NC_006273.1 + 206256 0.7 0.48025
Target:  5'- cGCCGUCaaGGCCGCCUcuucuggcccuCCGCcACCCu -3'
miRNA:   3'- uCGGUAG--CCGGCGGGu----------GGCGaUGGGc -5'
29768 5' -63.2 NC_006273.1 + 91180 0.7 0.462869
Target:  5'- cGCCGUgcCGGUCGUCgCACCGCUcgGCCaCGc -3'
miRNA:   3'- uCGGUA--GCCGGCGG-GUGGCGA--UGG-GC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.