miRNA display CGI


Results 41 - 60 of 214 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29768 5' -63.2 NC_006273.1 + 70827 0.69 0.497942
Target:  5'- uGGCCuUCGGCaCGCuggcgggccgaCCGCCGC-GCCCu -3'
miRNA:   3'- -UCGGuAGCCG-GCG-----------GGUGGCGaUGGGc -5'
29768 5' -63.2 NC_006273.1 + 196217 0.72 0.366255
Target:  5'- cGCCGcUCGGa-GCaCCGCCGCaGCCCGg -3'
miRNA:   3'- uCGGU-AGCCggCG-GGUGGCGaUGGGC- -5'
29768 5' -63.2 NC_006273.1 + 161648 0.79 0.133188
Target:  5'- gGGCC-UCGGCCG-CCGCCGCcACCCa -3'
miRNA:   3'- -UCGGuAGCCGGCgGGUGGCGaUGGGc -5'
29768 5' -63.2 NC_006273.1 + 193966 0.69 0.49527
Target:  5'- cGGUCAaCGGUaacuCGCCCugggcuccgacggcGCCGUUGCCCGg -3'
miRNA:   3'- -UCGGUaGCCG----GCGGG--------------UGGCGAUGGGC- -5'
29768 5' -63.2 NC_006273.1 + 140578 0.8 0.12096
Target:  5'- cGUCGUCGGCCGaCCGCCGCgACCCc -3'
miRNA:   3'- uCGGUAGCCGGCgGGUGGCGaUGGGc -5'
29768 5' -63.2 NC_006273.1 + 156807 0.68 0.590052
Target:  5'- aAGCgAUUGGCgGCCCGuucugaggaGCUACCCu -3'
miRNA:   3'- -UCGgUAGCCGgCGGGUgg-------CGAUGGGc -5'
29768 5' -63.2 NC_006273.1 + 161998 0.76 0.198739
Target:  5'- gGGCCGU-GGCUGCCCGCgCGCUuugcgacucuggGCCCGc -3'
miRNA:   3'- -UCGGUAgCCGGCGGGUG-GCGA------------UGGGC- -5'
29768 5' -63.2 NC_006273.1 + 46461 0.68 0.58064
Target:  5'- aAGCCgGUCGGCUGgacaCCGCCGgUgacGCCCa -3'
miRNA:   3'- -UCGG-UAGCCGGCg---GGUGGCgA---UGGGc -5'
29768 5' -63.2 NC_006273.1 + 114553 0.68 0.571259
Target:  5'- cGCCuuaaGGCCgaGUCCACCGUcgcGCCCGa -3'
miRNA:   3'- uCGGuag-CCGG--CGGGUGGCGa--UGGGC- -5'
29768 5' -63.2 NC_006273.1 + 119895 0.69 0.534156
Target:  5'- aGGCCGUacUGGCCGCCCGC----GCCCu -3'
miRNA:   3'- -UCGGUA--GCCGGCGGGUGgcgaUGGGc -5'
29768 5' -63.2 NC_006273.1 + 38489 0.69 0.522276
Target:  5'- cGGCCuccgucucCGuGCCGCUCGCCGCUGgcggcgacgucgucCCCGu -3'
miRNA:   3'- -UCGGua------GC-CGGCGGGUGGCGAU--------------GGGC- -5'
29768 5' -63.2 NC_006273.1 + 227690 0.69 0.506898
Target:  5'- uGCCG-CGGCCacugCCGCCGCcGCCCa -3'
miRNA:   3'- uCGGUaGCCGGcg--GGUGGCGaUGGGc -5'
29768 5' -63.2 NC_006273.1 + 5852 0.69 0.506898
Target:  5'- cGCCaAUUGGCgGCCCuCCGUUcgGCUCGg -3'
miRNA:   3'- uCGG-UAGCCGgCGGGuGGCGA--UGGGC- -5'
29768 5' -63.2 NC_006273.1 + 72319 0.7 0.462869
Target:  5'- cGCCGUCGccGCCGCCucggacuccugCACCGuCUcGCCCGc -3'
miRNA:   3'- uCGGUAGC--CGGCGG-----------GUGGC-GA-UGGGC- -5'
29768 5' -63.2 NC_006273.1 + 130503 0.7 0.457719
Target:  5'- -uCCAccUCGGCCGCCgGCCGCgugugaggcaaacaGCCCu -3'
miRNA:   3'- ucGGU--AGCCGGCGGgUGGCGa-------------UGGGc -5'
29768 5' -63.2 NC_006273.1 + 168606 0.71 0.412821
Target:  5'- aGGCCAgugucaGcGCCGagCCGCgGCUGCCCGg -3'
miRNA:   3'- -UCGGUag----C-CGGCg-GGUGgCGAUGGGC- -5'
29768 5' -63.2 NC_006273.1 + 140084 0.71 0.396895
Target:  5'- uGUCAU-GGCgGCCCACCGUcgACCCc -3'
miRNA:   3'- uCGGUAgCCGgCGGGUGGCGa-UGGGc -5'
29768 5' -63.2 NC_006273.1 + 193160 0.72 0.351558
Target:  5'- uGGCac-CGGCCGCCgAagcccaCGCUGCCCGu -3'
miRNA:   3'- -UCGguaGCCGGCGGgUg-----GCGAUGGGC- -5'
29768 5' -63.2 NC_006273.1 + 87852 0.72 0.344367
Target:  5'- cGUCAUCGGCgCGCCCccAUCGCcuCCCGa -3'
miRNA:   3'- uCGGUAGCCG-GCGGG--UGGCGauGGGC- -5'
29768 5' -63.2 NC_006273.1 + 41257 0.74 0.290692
Target:  5'- cGCCucagCGGUCGCCCuaucacaaccGCCGCUACUCu -3'
miRNA:   3'- uCGGua--GCCGGCGGG----------UGGCGAUGGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.