miRNA display CGI


Results 61 - 80 of 214 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29768 5' -63.2 NC_006273.1 + 5852 0.69 0.506898
Target:  5'- cGCCaAUUGGCgGCCCuCCGUUcgGCUCGg -3'
miRNA:   3'- uCGG-UAGCCGgCGGGuGGCGA--UGGGC- -5'
29768 5' -63.2 NC_006273.1 + 91243 0.69 0.515921
Target:  5'- aGGCU-UCGGCgGCgUGCCGCUgACCCa -3'
miRNA:   3'- -UCGGuAGCCGgCGgGUGGCGA-UGGGc -5'
29768 5' -63.2 NC_006273.1 + 171119 0.76 0.2228
Target:  5'- cGCCAuccgcuUCGGCCG-CCGCCGCaacGCCCGu -3'
miRNA:   3'- uCGGU------AGCCGGCgGGUGGCGa--UGGGC- -5'
29768 5' -63.2 NC_006273.1 + 17185 0.74 0.297027
Target:  5'- cGGUCGUCcGCCGUCgGCCGCcGCCCa -3'
miRNA:   3'- -UCGGUAGcCGGCGGgUGGCGaUGGGc -5'
29768 5' -63.2 NC_006273.1 + 96043 0.72 0.344367
Target:  5'- uGGCCuucugCGGCCG-CCACCGCgacuacaacucGCCCGa -3'
miRNA:   3'- -UCGGua---GCCGGCgGGUGGCGa----------UGGGC- -5'
29768 5' -63.2 NC_006273.1 + 198181 0.72 0.351558
Target:  5'- cGCgCGUCGGCCGCgucgcaaaCGCUGCUugguACCCGa -3'
miRNA:   3'- uCG-GUAGCCGGCGg-------GUGGCGA----UGGGC- -5'
29768 5' -63.2 NC_006273.1 + 201151 0.71 0.412821
Target:  5'- uGCCugcCGGCgGCCCuguGCCGCggguUGCCCGu -3'
miRNA:   3'- uCGGua-GCCGgCGGG---UGGCG----AUGGGC- -5'
29768 5' -63.2 NC_006273.1 + 202148 0.71 0.437435
Target:  5'- cGCCGUCGucGCCGCCCcgggGCCcucggugcGCUACCgGg -3'
miRNA:   3'- uCGGUAGC--CGGCGGG----UGG--------CGAUGGgC- -5'
29768 5' -63.2 NC_006273.1 + 68202 0.7 0.462869
Target:  5'- cGGCCuccgCGGCCgcugcGCCCGCCGUgGCCa- -3'
miRNA:   3'- -UCGGua--GCCGG-----CGGGUGGCGaUGGgc -5'
29768 5' -63.2 NC_006273.1 + 118444 0.7 0.475874
Target:  5'- uAGCCcgucacgGUCGGCCGCCgugaggucuggaaACCGCUgugugACCCa -3'
miRNA:   3'- -UCGG-------UAGCCGGCGGg------------UGGCGA-----UGGGc -5'
29768 5' -63.2 NC_006273.1 + 72601 0.67 0.646874
Target:  5'- cAGCgaCAUgCGGCCGCugCCGCCGCcACCa- -3'
miRNA:   3'- -UCG--GUA-GCCGGCG--GGUGGCGaUGGgc -5'
29768 5' -63.2 NC_006273.1 + 199481 0.67 0.637392
Target:  5'- gGGUCGUUGGCUcccgcugugcuGgCCGCCGCUGCaCGg -3'
miRNA:   3'- -UCGGUAGCCGG-----------CgGGUGGCGAUGgGC- -5'
29768 5' -63.2 NC_006273.1 + 31197 0.69 0.534156
Target:  5'- cGGCCGgcguccaGGCUGCCCugguuGCCGCUgcggguaacGCCCu -3'
miRNA:   3'- -UCGGUag-----CCGGCGGG-----UGGCGA---------UGGGc -5'
29768 5' -63.2 NC_006273.1 + 179250 0.69 0.543359
Target:  5'- --gCGUCGGUCGCCgccuCCGCgGCCCGu -3'
miRNA:   3'- ucgGUAGCCGGCGGgu--GGCGaUGGGC- -5'
29768 5' -63.2 NC_006273.1 + 46461 0.68 0.58064
Target:  5'- aAGCCgGUCGGCUGgacaCCGCCGgUgacGCCCa -3'
miRNA:   3'- -UCGG-UAGCCGGCg---GGUGGCgA---UGGGc -5'
29768 5' -63.2 NC_006273.1 + 156807 0.68 0.590052
Target:  5'- aAGCgAUUGGCgGCCCGuucugaggaGCUACCCu -3'
miRNA:   3'- -UCGgUAGCCGgCGGGUgg-------CGAUGGGc -5'
29768 5' -63.2 NC_006273.1 + 72256 0.68 0.59949
Target:  5'- uGCC-UCcGCCGCCUcaGCCGgaGCCCu -3'
miRNA:   3'- uCGGuAGcCGGCGGG--UGGCgaUGGGc -5'
29768 5' -63.2 NC_006273.1 + 214784 0.68 0.59949
Target:  5'- cGCCAguucuugcgcuUCGGCCGCCgGguucugucCCGgaACCCa -3'
miRNA:   3'- uCGGU-----------AGCCGGCGGgU--------GGCgaUGGGc -5'
29768 5' -63.2 NC_006273.1 + 204717 0.67 0.618424
Target:  5'- gAGCCccgaGGCgCGCCCGCUGCgAUCUGc -3'
miRNA:   3'- -UCGGuag-CCG-GCGGGUGGCGaUGGGC- -5'
29768 5' -63.2 NC_006273.1 + 99289 0.67 0.627907
Target:  5'- cGCgAUC-GCCGCCCACgGCgucCUCGg -3'
miRNA:   3'- uCGgUAGcCGGCGGGUGgCGau-GGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.