miRNA display CGI


Results 81 - 100 of 214 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29768 5' -63.2 NC_006273.1 + 154436 0.68 0.58064
Target:  5'- cAGCUcgUGGCCGCgCUAUCGaUGCCUGu -3'
miRNA:   3'- -UCGGuaGCCGGCG-GGUGGCgAUGGGC- -5'
29768 5' -63.2 NC_006273.1 + 213242 0.68 0.590052
Target:  5'- -cUCAgagaCGGCCG-CCGCCGCUACCg- -3'
miRNA:   3'- ucGGUa---GCCGGCgGGUGGCGAUGGgc -5'
29768 5' -63.2 NC_006273.1 + 72256 0.68 0.59949
Target:  5'- uGCC-UCcGCCGCCUcaGCCGgaGCCCu -3'
miRNA:   3'- uCGGuAGcCGGCGGG--UGGCgaUGGGc -5'
29768 5' -63.2 NC_006273.1 + 85419 0.68 0.608949
Target:  5'- uAGCCGauaUCGGCCGCCaaCGCCG-UAUCgCGu -3'
miRNA:   3'- -UCGGU---AGCCGGCGG--GUGGCgAUGG-GC- -5'
29768 5' -63.2 NC_006273.1 + 195553 0.67 0.618424
Target:  5'- cGGCUcgCcGCCGCgCCACaCGCUgaGCCCc -3'
miRNA:   3'- -UCGGuaGcCGGCG-GGUG-GCGA--UGGGc -5'
29768 5' -63.2 NC_006273.1 + 115440 0.67 0.637392
Target:  5'- uGGCCuUUGcGCUGCCgCuggACCGCgUGCCCGu -3'
miRNA:   3'- -UCGGuAGC-CGGCGG-G---UGGCG-AUGGGC- -5'
29768 5' -63.2 NC_006273.1 + 199481 0.67 0.637392
Target:  5'- gGGUCGUUGGCUcccgcugugcuGgCCGCCGCUGCaCGg -3'
miRNA:   3'- -UCGGUAGCCGG-----------CgGGUGGCGAUGgGC- -5'
29768 5' -63.2 NC_006273.1 + 38343 0.69 0.506898
Target:  5'- cGCCGUCGcGuCCGCCCcgaccACCGCgUGCgCGu -3'
miRNA:   3'- uCGGUAGC-C-GGCGGG-----UGGCG-AUGgGC- -5'
29768 5' -63.2 NC_006273.1 + 70827 0.69 0.497942
Target:  5'- uGGCCuUCGGCaCGCuggcgggccgaCCGCCGC-GCCCu -3'
miRNA:   3'- -UCGGuAGCCG-GCG-----------GGUGGCGaUGGGc -5'
29768 5' -63.2 NC_006273.1 + 72319 0.7 0.462869
Target:  5'- cGCCGUCGccGCCGCCucggacuccugCACCGuCUcGCCCGc -3'
miRNA:   3'- uCGGUAGC--CGGCGG-----------GUGGC-GA-UGGGC- -5'
29768 5' -63.2 NC_006273.1 + 162198 0.67 0.656347
Target:  5'- uGGUgAUCGGCCGCggugCGCUGCaGCCgGa -3'
miRNA:   3'- -UCGgUAGCCGGCGg---GUGGCGaUGGgC- -5'
29768 5' -63.2 NC_006273.1 + 140983 0.66 0.674293
Target:  5'- cGGCCGaggUCcggagcgGGCCGCgC-CCGgUGCCCGg -3'
miRNA:   3'- -UCGGU---AG-------CCGGCGgGuGGCgAUGGGC- -5'
29768 5' -63.2 NC_006273.1 + 38039 0.66 0.675235
Target:  5'- -cCCAgcgCGGCCGCucCCACUGCUcgcgguccaGCUCGg -3'
miRNA:   3'- ucGGUa--GCCGGCG--GGUGGCGA---------UGGGC- -5'
29768 5' -63.2 NC_006273.1 + 55809 0.66 0.678999
Target:  5'- cAGCCGUcguuucuaagcuuuaCGuGCCGCCUGCaGCUagaACCCGu -3'
miRNA:   3'- -UCGGUA---------------GC-CGGCGGGUGgCGA---UGGGC- -5'
29768 5' -63.2 NC_006273.1 + 49762 0.66 0.684636
Target:  5'- uGCuCAUCGagcuuCCGCCggaGCCGCUcccACCCGa -3'
miRNA:   3'- uCG-GUAGCc----GGCGGg--UGGCGA---UGGGC- -5'
29768 5' -63.2 NC_006273.1 + 87852 0.72 0.344367
Target:  5'- cGUCAUCGGCgCGCCCccAUCGCcuCCCGa -3'
miRNA:   3'- uCGGUAGCCG-GCGGG--UGGCGauGGGC- -5'
29768 5' -63.2 NC_006273.1 + 193160 0.72 0.351558
Target:  5'- uGGCac-CGGCCGCCgAagcccaCGCUGCCCGu -3'
miRNA:   3'- -UCGguaGCCGGCGGgUg-----GCGAUGGGC- -5'
29768 5' -63.2 NC_006273.1 + 73130 0.72 0.37376
Target:  5'- gGGCCGUCGcgaGuCCCGCCGCUGCCa- -3'
miRNA:   3'- -UCGGUAGCcggC-GGGUGGCGAUGGgc -5'
29768 5' -63.2 NC_006273.1 + 38752 0.71 0.412821
Target:  5'- -aCCGUCGuGCCgGCCCACCGCcggcgcagcuCCCGu -3'
miRNA:   3'- ucGGUAGC-CGG-CGGGUGGCGau--------GGGC- -5'
29768 5' -63.2 NC_006273.1 + 130503 0.7 0.457719
Target:  5'- -uCCAccUCGGCCGCCgGCCGCgugugaggcaaacaGCCCu -3'
miRNA:   3'- ucGGU--AGCCGGCGGgUGGCGa-------------UGGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.