miRNA display CGI


Results 1 - 20 of 28 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2977 3' -49 NC_001493.1 + 110814 0.66 0.997931
Target:  5'- ----gUUCGAUcguggugauAUGGCCGGGCccGGCc -3'
miRNA:   3'- caaaaAAGCUAu--------UGCCGGCCCGu-CUG- -5'
2977 3' -49 NC_001493.1 + 61139 0.66 0.997931
Target:  5'- -------aGGUGAgGcGCCGGGUGGGCc -3'
miRNA:   3'- caaaaaagCUAUUgC-CGGCCCGUCUG- -5'
2977 3' -49 NC_001493.1 + 102105 0.66 0.99656
Target:  5'- -----aUUGGUugccgcacaugcauCGGUCGGGCGGGCa -3'
miRNA:   3'- caaaaaAGCUAuu------------GCCGGCCCGUCUG- -5'
2977 3' -49 NC_001493.1 + 65255 0.67 0.994342
Target:  5'- --aUUUUCGGUAACGa--GGGCAGcCg -3'
miRNA:   3'- caaAAAAGCUAUUGCcggCCCGUCuG- -5'
2977 3' -49 NC_001493.1 + 44981 0.67 0.992381
Target:  5'- ---aUUUCGAUGcgGGCCGucgaucacuaucGGCAGGCc -3'
miRNA:   3'- caaaAAAGCUAUugCCGGC------------CCGUCUG- -5'
2977 3' -49 NC_001493.1 + 17876 0.67 0.992381
Target:  5'- ----cUUCGAacacucgcACGGaCCGGGCgAGACg -3'
miRNA:   3'- caaaaAAGCUau------UGCC-GGCCCG-UCUG- -5'
2977 3' -49 NC_001493.1 + 133430 0.67 0.992381
Target:  5'- ----cUUCGAacacucgcACGGaCCGGGCgAGACg -3'
miRNA:   3'- caaaaAAGCUau------UGCC-GGCCCG-UCUG- -5'
2977 3' -49 NC_001493.1 + 50709 0.68 0.989915
Target:  5'- -cUUUUUgGAUGugguacgagucGCGGCCguGGGUGGACc -3'
miRNA:   3'- caAAAAAgCUAU-----------UGCCGG--CCCGUCUG- -5'
2977 3' -49 NC_001493.1 + 125163 0.68 0.989915
Target:  5'- -----gUCGGUGACGGC-GGGU-GACu -3'
miRNA:   3'- caaaaaAGCUAUUGCCGgCCCGuCUG- -5'
2977 3' -49 NC_001493.1 + 9609 0.68 0.989915
Target:  5'- -----gUCGGUGACGGC-GGGU-GACu -3'
miRNA:   3'- caaaaaAGCUAUUGCCGgCCCGuCUG- -5'
2977 3' -49 NC_001493.1 + 92253 0.68 0.988467
Target:  5'- -----------cACGGCCGGGguGACc -3'
miRNA:   3'- caaaaaagcuauUGCCGGCCCguCUG- -5'
2977 3' -49 NC_001493.1 + 87512 0.68 0.988467
Target:  5'- ------gCGAUGAUGGCCGGaccgaaCGGGCg -3'
miRNA:   3'- caaaaaaGCUAUUGCCGGCCc-----GUCUG- -5'
2977 3' -49 NC_001493.1 + 126709 0.68 0.985093
Target:  5'- -----cUCGAUGACccCCGaGGCGGACg -3'
miRNA:   3'- caaaaaAGCUAUUGccGGC-CCGUCUG- -5'
2977 3' -49 NC_001493.1 + 11154 0.68 0.985093
Target:  5'- -----cUCGAUGACccCCGaGGCGGACg -3'
miRNA:   3'- caaaaaAGCUAUUGccGGC-CCGUCUG- -5'
2977 3' -49 NC_001493.1 + 106963 0.68 0.983147
Target:  5'- ----gUUCGA-GAC-GCCGGGCAuGACa -3'
miRNA:   3'- caaaaAAGCUaUUGcCGGCCCGU-CUG- -5'
2977 3' -49 NC_001493.1 + 118426 0.69 0.978686
Target:  5'- ----gUUCGAccacGGCGGCCagaguGGGCAGAg -3'
miRNA:   3'- caaaaAAGCUa---UUGCCGG-----CCCGUCUg -5'
2977 3' -49 NC_001493.1 + 2872 0.69 0.978686
Target:  5'- ----gUUCGAccacGGCGGCCagaguGGGCAGAg -3'
miRNA:   3'- caaaaAAGCUa---UUGCCGG-----CCCGUCUg -5'
2977 3' -49 NC_001493.1 + 14688 0.69 0.976153
Target:  5'- ------cCGAguGCGGCUccggGGGCGGACg -3'
miRNA:   3'- caaaaaaGCUauUGCCGG----CCCGUCUG- -5'
2977 3' -49 NC_001493.1 + 130242 0.69 0.976153
Target:  5'- ------cCGAguGCGGCUccggGGGCGGACg -3'
miRNA:   3'- caaaaaaGCUauUGCCGG----CCCGUCUG- -5'
2977 3' -49 NC_001493.1 + 15007 0.69 0.973407
Target:  5'- ------aUGAUGACGGCCGuGaGCAGGu -3'
miRNA:   3'- caaaaaaGCUAUUGCCGGC-C-CGUCUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.