miRNA display CGI


Results 1 - 19 of 19 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2977 5' -59.4 NC_001493.1 + 3881 0.66 0.71862
Target:  5'- uGAGCCgguccGUCCGGGGUgagguggcAUCGCCu---- -3'
miRNA:   3'- -CUCGGa----CAGGCCCCG--------UAGUGGccuuu -5'
2977 5' -59.4 NC_001493.1 + 119435 0.66 0.71862
Target:  5'- uGAGCCgguccGUCCGGGGUgagguggcAUCGCCu---- -3'
miRNA:   3'- -CUCGGa----CAGGCCCCG--------UAGUGGccuuu -5'
2977 5' -59.4 NC_001493.1 + 63362 0.66 0.71862
Target:  5'- -cGUUUGcucCCGcGGGCAUCGCCGGu-- -3'
miRNA:   3'- cuCGGACa--GGC-CCCGUAGUGGCCuuu -5'
2977 5' -59.4 NC_001493.1 + 63611 0.66 0.71862
Target:  5'- uGGCUc--CCGcGGGCAUCGCCGGu-- -3'
miRNA:   3'- cUCGGacaGGC-CCCGUAGUGGCCuuu -5'
2977 5' -59.4 NC_001493.1 + 63668 0.66 0.71862
Target:  5'- uGGCUc--CCGcGGGCAUCGCCGGu-- -3'
miRNA:   3'- cUCGGacaGGC-CCCGUAGUGGCCuuu -5'
2977 5' -59.4 NC_001493.1 + 128396 0.66 0.708658
Target:  5'- cGGGUCgcGUCCGGGGuCGgggCGCuCGGGAu -3'
miRNA:   3'- -CUCGGa-CAGGCCCC-GUa--GUG-GCCUUu -5'
2977 5' -59.4 NC_001493.1 + 12842 0.66 0.708658
Target:  5'- cGGGUCgcGUCCGGGGuCGgggCGCuCGGGAu -3'
miRNA:   3'- -CUCGGa-CAGGCCCC-GUa--GUG-GCCUUu -5'
2977 5' -59.4 NC_001493.1 + 63281 0.66 0.698631
Target:  5'- cGGUCgcucCCGuGGGCAUCGCCGGu-- -3'
miRNA:   3'- cUCGGaca-GGC-CCCGUAGUGGCCuuu -5'
2977 5' -59.4 NC_001493.1 + 63236 0.66 0.698631
Target:  5'- cGGUCgcucCCGuGGGCAUCGCCGGu-- -3'
miRNA:   3'- cUCGGaca-GGC-CCCGUAGUGGCCuuu -5'
2977 5' -59.4 NC_001493.1 + 63191 0.66 0.698631
Target:  5'- cGGUCgcucCCGuGGGCAUCGCCGGu-- -3'
miRNA:   3'- cUCGGaca-GGC-CCCGUAGUGGCCuuu -5'
2977 5' -59.4 NC_001493.1 + 44472 0.67 0.66825
Target:  5'- cGAGCg-GuUCCGGGGCcugcUCggGCCGGAGAu -3'
miRNA:   3'- -CUCGgaC-AGGCCCCGu---AG--UGGCCUUU- -5'
2977 5' -59.4 NC_001493.1 + 15347 0.67 0.627371
Target:  5'- uAGUCcGUCguagCGGGGCGUC-CCGGAGc -3'
miRNA:   3'- cUCGGaCAG----GCCCCGUAGuGGCCUUu -5'
2977 5' -59.4 NC_001493.1 + 130901 0.67 0.627371
Target:  5'- uAGUCcGUCguagCGGGGCGUC-CCGGAGc -3'
miRNA:   3'- cUCGGaCAG----GCCCCGUAGuGGCCUUu -5'
2977 5' -59.4 NC_001493.1 + 100976 0.68 0.575391
Target:  5'- gGAGCU--UCgGGGGCggggguuGUCGCCGGAAc -3'
miRNA:   3'- -CUCGGacAGgCCCCG-------UAGUGGCCUUu -5'
2977 5' -59.4 NC_001493.1 + 30506 0.69 0.52543
Target:  5'- cGGUCUGUCCGGGGCGaucccccUUGCCGu--- -3'
miRNA:   3'- cUCGGACAGGCCCCGU-------AGUGGCcuuu -5'
2977 5' -59.4 NC_001493.1 + 16702 0.69 0.501058
Target:  5'- cGGGCCUcucgccCUGGGGCAcccucaccgguccucUCACCGGggGu -3'
miRNA:   3'- -CUCGGAca----GGCCCCGU---------------AGUGGCCuuU- -5'
2977 5' -59.4 NC_001493.1 + 87945 0.69 0.497204
Target:  5'- cGGGaCCUGccccCCGGGGCGUacgaggaGCCGGAu- -3'
miRNA:   3'- -CUC-GGACa---GGCCCCGUAg------UGGCCUuu -5'
2977 5' -59.4 NC_001493.1 + 132256 0.69 0.494323
Target:  5'- cGGGCCUcucgccCUGGGGCAcccucccgguccucUCACCGGggGu -3'
miRNA:   3'- -CUCGGAca----GGCCCCGU--------------AGUGGCCuuU- -5'
2977 5' -59.4 NC_001493.1 + 97217 1.05 0.001783
Target:  5'- gGAGCCUGUCCGGGGCAUCACCGGAAAa -3'
miRNA:   3'- -CUCGGACAGGCCCCGUAGUGGCCUUU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.