Results 1 - 19 of 19 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
2977 | 5' | -59.4 | NC_001493.1 | + | 30506 | 0.69 | 0.52543 |
Target: 5'- cGGUCUGUCCGGGGCGaucccccUUGCCGu--- -3' miRNA: 3'- cUCGGACAGGCCCCGU-------AGUGGCcuuu -5' |
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2977 | 5' | -59.4 | NC_001493.1 | + | 119435 | 0.66 | 0.71862 |
Target: 5'- uGAGCCgguccGUCCGGGGUgagguggcAUCGCCu---- -3' miRNA: 3'- -CUCGGa----CAGGCCCCG--------UAGUGGccuuu -5' |
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2977 | 5' | -59.4 | NC_001493.1 | + | 3881 | 0.66 | 0.71862 |
Target: 5'- uGAGCCgguccGUCCGGGGUgagguggcAUCGCCu---- -3' miRNA: 3'- -CUCGGa----CAGGCCCCG--------UAGUGGccuuu -5' |
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2977 | 5' | -59.4 | NC_001493.1 | + | 63668 | 0.66 | 0.71862 |
Target: 5'- uGGCUc--CCGcGGGCAUCGCCGGu-- -3' miRNA: 3'- cUCGGacaGGC-CCCGUAGUGGCCuuu -5' |
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2977 | 5' | -59.4 | NC_001493.1 | + | 63611 | 0.66 | 0.71862 |
Target: 5'- uGGCUc--CCGcGGGCAUCGCCGGu-- -3' miRNA: 3'- cUCGGacaGGC-CCCGUAGUGGCCuuu -5' |
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2977 | 5' | -59.4 | NC_001493.1 | + | 63362 | 0.66 | 0.71862 |
Target: 5'- -cGUUUGcucCCGcGGGCAUCGCCGGu-- -3' miRNA: 3'- cuCGGACa--GGC-CCCGUAGUGGCCuuu -5' |
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2977 | 5' | -59.4 | NC_001493.1 | + | 63281 | 0.66 | 0.698631 |
Target: 5'- cGGUCgcucCCGuGGGCAUCGCCGGu-- -3' miRNA: 3'- cUCGGaca-GGC-CCCGUAGUGGCCuuu -5' |
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2977 | 5' | -59.4 | NC_001493.1 | + | 63236 | 0.66 | 0.698631 |
Target: 5'- cGGUCgcucCCGuGGGCAUCGCCGGu-- -3' miRNA: 3'- cUCGGaca-GGC-CCCGUAGUGGCCuuu -5' |
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2977 | 5' | -59.4 | NC_001493.1 | + | 63191 | 0.66 | 0.698631 |
Target: 5'- cGGUCgcucCCGuGGGCAUCGCCGGu-- -3' miRNA: 3'- cUCGGaca-GGC-CCCGUAGUGGCCuuu -5' |
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2977 | 5' | -59.4 | NC_001493.1 | + | 128396 | 0.66 | 0.708658 |
Target: 5'- cGGGUCgcGUCCGGGGuCGgggCGCuCGGGAu -3' miRNA: 3'- -CUCGGa-CAGGCCCC-GUa--GUG-GCCUUu -5' |
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2977 | 5' | -59.4 | NC_001493.1 | + | 44472 | 0.67 | 0.66825 |
Target: 5'- cGAGCg-GuUCCGGGGCcugcUCggGCCGGAGAu -3' miRNA: 3'- -CUCGgaC-AGGCCCCGu---AG--UGGCCUUU- -5' |
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2977 | 5' | -59.4 | NC_001493.1 | + | 15347 | 0.67 | 0.627371 |
Target: 5'- uAGUCcGUCguagCGGGGCGUC-CCGGAGc -3' miRNA: 3'- cUCGGaCAG----GCCCCGUAGuGGCCUUu -5' |
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2977 | 5' | -59.4 | NC_001493.1 | + | 130901 | 0.67 | 0.627371 |
Target: 5'- uAGUCcGUCguagCGGGGCGUC-CCGGAGc -3' miRNA: 3'- cUCGGaCAG----GCCCCGUAGuGGCCUUu -5' |
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2977 | 5' | -59.4 | NC_001493.1 | + | 100976 | 0.68 | 0.575391 |
Target: 5'- gGAGCU--UCgGGGGCggggguuGUCGCCGGAAc -3' miRNA: 3'- -CUCGGacAGgCCCCG-------UAGUGGCCUUu -5' |
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2977 | 5' | -59.4 | NC_001493.1 | + | 16702 | 0.69 | 0.501058 |
Target: 5'- cGGGCCUcucgccCUGGGGCAcccucaccgguccucUCACCGGggGu -3' miRNA: 3'- -CUCGGAca----GGCCCCGU---------------AGUGGCCuuU- -5' |
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2977 | 5' | -59.4 | NC_001493.1 | + | 87945 | 0.69 | 0.497204 |
Target: 5'- cGGGaCCUGccccCCGGGGCGUacgaggaGCCGGAu- -3' miRNA: 3'- -CUC-GGACa---GGCCCCGUAg------UGGCCUuu -5' |
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2977 | 5' | -59.4 | NC_001493.1 | + | 132256 | 0.69 | 0.494323 |
Target: 5'- cGGGCCUcucgccCUGGGGCAcccucccgguccucUCACCGGggGu -3' miRNA: 3'- -CUCGGAca----GGCCCCGU--------------AGUGGCCuuU- -5' |
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2977 | 5' | -59.4 | NC_001493.1 | + | 97217 | 1.05 | 0.001783 |
Target: 5'- gGAGCCUGUCCGGGGCAUCACCGGAAAa -3' miRNA: 3'- -CUCGGACAGGCCCCGUAGUGGCCUUU- -5' |
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2977 | 5' | -59.4 | NC_001493.1 | + | 12842 | 0.66 | 0.708658 |
Target: 5'- cGGGUCgcGUCCGGGGuCGgggCGCuCGGGAu -3' miRNA: 3'- -CUCGGa-CAGGCCCC-GUa--GUG-GCCUUu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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