miRNA display CGI


Results 1 - 20 of 25 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29774 3' -52.9 NC_006273.1 + 163093 0.66 0.993289
Target:  5'- gCGCUGcgCGgcGGCCUcaucggcaGCGUCAucGACc -3'
miRNA:   3'- aGCGACaaGCuaCUGGA--------CGCAGU--CUG- -5'
29774 3' -52.9 NC_006273.1 + 169890 0.66 0.993006
Target:  5'- aUCGCUGagggggaggaggaggCGGUGGCCaGUGUUuuGGACg -3'
miRNA:   3'- -AGCGACaa-------------GCUACUGGaCGCAG--UCUG- -5'
29774 3' -52.9 NC_006273.1 + 97089 0.66 0.992308
Target:  5'- cUCGUUGUg-GAUGAgcgaCUGCGUCauGGGCc -3'
miRNA:   3'- -AGCGACAagCUACUg---GACGCAG--UCUG- -5'
29774 3' -52.9 NC_006273.1 + 3797 0.66 0.991216
Target:  5'- -aGCUGUgucuagCGAUGucuuCCUGCGUCccACc -3'
miRNA:   3'- agCGACAa-----GCUACu---GGACGCAGucUG- -5'
29774 3' -52.9 NC_006273.1 + 217648 0.66 0.990746
Target:  5'- gCGCUGcgCGAaagcuuaauauagGAgCaGCGUCAGACg -3'
miRNA:   3'- aGCGACaaGCUa------------CUgGaCGCAGUCUG- -5'
29774 3' -52.9 NC_006273.1 + 174207 0.66 0.990005
Target:  5'- cUCGCUGggcaucaccUCGuUGcucACCUGCGUCAuGCg -3'
miRNA:   3'- -AGCGACa--------AGCuAC---UGGACGCAGUcUG- -5'
29774 3' -52.9 NC_006273.1 + 160239 0.66 0.990005
Target:  5'- cCGCUGUaacgCGAaacGGCCUGuCGUugCGGACu -3'
miRNA:   3'- aGCGACAa---GCUa--CUGGAC-GCA--GUCUG- -5'
29774 3' -52.9 NC_006273.1 + 196762 0.66 0.988667
Target:  5'- gUCGCUGc-UGAcGGCCgUGCGUCGGcACc -3'
miRNA:   3'- -AGCGACaaGCUaCUGG-ACGCAGUC-UG- -5'
29774 3' -52.9 NC_006273.1 + 1870 0.66 0.988667
Target:  5'- gUCGCUGc-UGAcGGCCgUGCGUCGGcACc -3'
miRNA:   3'- -AGCGACaaGCUaCUGG-ACGCAGUC-UG- -5'
29774 3' -52.9 NC_006273.1 + 183025 0.67 0.987194
Target:  5'- cUGCUGgaCGA-GGCCgagugGCGaCAGACg -3'
miRNA:   3'- aGCGACaaGCUaCUGGa----CGCaGUCUG- -5'
29774 3' -52.9 NC_006273.1 + 176309 0.67 0.985577
Target:  5'- cUCGCUGUUUGGgcGGCCUgucucccgGCGgcucUCGGACc -3'
miRNA:   3'- -AGCGACAAGCUa-CUGGA--------CGC----AGUCUG- -5'
29774 3' -52.9 NC_006273.1 + 199577 0.67 0.981882
Target:  5'- gCGCUucUCGu--GCCUGCGcCAGGCg -3'
miRNA:   3'- aGCGAcaAGCuacUGGACGCaGUCUG- -5'
29774 3' -52.9 NC_006273.1 + 186252 0.67 0.979787
Target:  5'- aCGUUGguuUCGGUuuaGCCUGCGUCaccgAGGCg -3'
miRNA:   3'- aGCGACa--AGCUAc--UGGACGCAG----UCUG- -5'
29774 3' -52.9 NC_006273.1 + 26633 0.68 0.975066
Target:  5'- aCGUUGUUCG-UGGCCUGCaaCGG-Cg -3'
miRNA:   3'- aGCGACAAGCuACUGGACGcaGUCuG- -5'
29774 3' -52.9 NC_006273.1 + 196246 0.69 0.959836
Target:  5'- gCGUggGcgCGAcgGACCUGCGUCAG-Cu -3'
miRNA:   3'- aGCGa-CaaGCUa-CUGGACGCAGUCuG- -5'
29774 3' -52.9 NC_006273.1 + 1353 0.69 0.959836
Target:  5'- gCGUggGcgCGAcgGACCUGCGUCAG-Cu -3'
miRNA:   3'- aGCGa-CaaGCUa-CUGGACGCAGUCuG- -5'
29774 3' -52.9 NC_006273.1 + 119983 0.69 0.94376
Target:  5'- gUGUUGUUUucUGAgCCUgGCGUCAGGCg -3'
miRNA:   3'- aGCGACAAGcuACU-GGA-CGCAGUCUG- -5'
29774 3' -52.9 NC_006273.1 + 67217 0.7 0.939166
Target:  5'- cCGCUGUUCGAggaccggcugcUGGCCUacgGCGUgCuGGCu -3'
miRNA:   3'- aGCGACAAGCU-----------ACUGGA---CGCA-GuCUG- -5'
29774 3' -52.9 NC_006273.1 + 81095 0.7 0.929276
Target:  5'- cCGCcGaUCGAUGACCaaacGCGUCAG-Cg -3'
miRNA:   3'- aGCGaCaAGCUACUGGa---CGCAGUCuG- -5'
29774 3' -52.9 NC_006273.1 + 129394 0.72 0.865871
Target:  5'- gCGCUGgUCu-UGACgUGCGUCAGAa -3'
miRNA:   3'- aGCGACaAGcuACUGgACGCAGUCUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.