miRNA display CGI


Results 1 - 20 of 45 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29774 5' -56.3 NC_006273.1 + 54921 0.66 0.955791
Target:  5'- -cGgGGGUCGauaGGGCGGugG--GCUGc -3'
miRNA:   3'- gaUgCCCAGCg--UCCGUCugCuuCGAC- -5'
29774 5' -56.3 NC_006273.1 + 118192 0.66 0.955791
Target:  5'- aCUGCGGcuGUCGCccgaacgcucGGCGGACGccGCUu -3'
miRNA:   3'- -GAUGCC--CAGCGu---------CCGUCUGCuuCGAc -5'
29774 5' -56.3 NC_006273.1 + 145078 0.66 0.951952
Target:  5'- -cGCGGGcgacgcCGCuGGCGG-CGgcGCUGa -3'
miRNA:   3'- gaUGCCCa-----GCGuCCGUCuGCuuCGAC- -5'
29774 5' -56.3 NC_006273.1 + 167150 0.66 0.951952
Target:  5'- -gACGGGcCGCuggaagucGGCGGGCgGggGCg- -3'
miRNA:   3'- gaUGCCCaGCGu-------CCGUCUG-CuuCGac -5'
29774 5' -56.3 NC_006273.1 + 145096 0.66 0.951952
Target:  5'- -aACGGGUUGUcGGCGGccuGCGAAGaCg- -3'
miRNA:   3'- gaUGCCCAGCGuCCGUC---UGCUUC-Gac -5'
29774 5' -56.3 NC_006273.1 + 226133 0.66 0.947895
Target:  5'- gUACGGuccUCGCAGGUGGcGCGGuAGUUGg -3'
miRNA:   3'- gAUGCCc--AGCGUCCGUC-UGCU-UCGAC- -5'
29774 5' -56.3 NC_006273.1 + 100872 0.66 0.947895
Target:  5'- gCUGaaGGUCGUAGaCGGGCGAGGUa- -3'
miRNA:   3'- -GAUgcCCAGCGUCcGUCUGCUUCGac -5'
29774 5' -56.3 NC_006273.1 + 64258 0.66 0.947895
Target:  5'- -cACGGGcgUUGCGgcGGCGGcCGAAGCg- -3'
miRNA:   3'- gaUGCCC--AGCGU--CCGUCuGCUUCGac -5'
29774 5' -56.3 NC_006273.1 + 4604 0.66 0.947895
Target:  5'- gCUGgGGGUgGC-GGUAGugGuacuGCUGa -3'
miRNA:   3'- -GAUgCCCAgCGuCCGUCugCuu--CGAC- -5'
29774 5' -56.3 NC_006273.1 + 55787 0.66 0.943617
Target:  5'- gUACGGGUagcgGUGGGCGGcCGAuGGCUu -3'
miRNA:   3'- gAUGCCCAg---CGUCCGUCuGCU-UCGAc -5'
29774 5' -56.3 NC_006273.1 + 168939 0.66 0.939117
Target:  5'- -cACGGaGgUGgAGGCGGACGAGGUa- -3'
miRNA:   3'- gaUGCC-CaGCgUCCGUCUGCUUCGac -5'
29774 5' -56.3 NC_006273.1 + 213817 0.66 0.939117
Target:  5'- -aACaGGcagcCGaCGGGCAcGACGAGGCUGa -3'
miRNA:   3'- gaUGcCCa---GC-GUCCGU-CUGCUUCGAC- -5'
29774 5' -56.3 NC_006273.1 + 47390 0.66 0.939117
Target:  5'- -gACGcGGUUGCcGGCGGAgGu-GCUGg -3'
miRNA:   3'- gaUGC-CCAGCGuCCGUCUgCuuCGAC- -5'
29774 5' -56.3 NC_006273.1 + 167274 0.66 0.934393
Target:  5'- -gGC-GGUgGCGGGCAuGACGggGUUu -3'
miRNA:   3'- gaUGcCCAgCGUCCGU-CUGCuuCGAc -5'
29774 5' -56.3 NC_006273.1 + 73738 0.66 0.934393
Target:  5'- -cAUGGGUgGCGgcGGCGGcCGAGGCc- -3'
miRNA:   3'- gaUGCCCAgCGU--CCGUCuGCUUCGac -5'
29774 5' -56.3 NC_006273.1 + 113515 0.67 0.928935
Target:  5'- -gGCGGGUugcccggggggcgCGCGGGCGG-CGAAGa-- -3'
miRNA:   3'- gaUGCCCA-------------GCGUCCGUCuGCUUCgac -5'
29774 5' -56.3 NC_006273.1 + 14323 0.67 0.924266
Target:  5'- gCUGCGGGUU-CuGGCccuGACGgcGCUGc -3'
miRNA:   3'- -GAUGCCCAGcGuCCGu--CUGCuuCGAC- -5'
29774 5' -56.3 NC_006273.1 + 124433 0.67 0.918863
Target:  5'- gCUGCGGccgCGCGGGCGuGCGcGGCUc -3'
miRNA:   3'- -GAUGCCca-GCGUCCGUcUGCuUCGAc -5'
29774 5' -56.3 NC_006273.1 + 138169 0.67 0.913234
Target:  5'- -cACGGccUGCGGGCAGGCGGguugcAGCUu -3'
miRNA:   3'- gaUGCCcaGCGUCCGUCUGCU-----UCGAc -5'
29774 5' -56.3 NC_006273.1 + 100562 0.67 0.911502
Target:  5'- gUGCGGGUugacggguagcccgUGCAGGUGGugGuacuucauguAGCUGa -3'
miRNA:   3'- gAUGCCCA--------------GCGUCCGUCugCu---------UCGAC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.