miRNA display CGI


Results 1 - 20 of 30 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29779 3' -56.2 NC_006273.1 + 760 0.67 0.902195
Target:  5'- uGCggCGUGCugUGUccggCGCUUUGUGcGCAc -3'
miRNA:   3'- -CGa-GCAUGugACGa---GCGAGACGC-CGU- -5'
29779 3' -56.2 NC_006273.1 + 9714 0.66 0.952658
Target:  5'- uGUUgGUGCACUGgUCaucuGCuuUCUGCGGUc -3'
miRNA:   3'- -CGAgCAUGUGACgAG----CG--AGACGCCGu -5'
29779 3' -56.2 NC_006273.1 + 21005 0.68 0.895908
Target:  5'- uUUCGUuccuCAC-GCUCGCUCUGCuaaGCGa -3'
miRNA:   3'- cGAGCAu---GUGaCGAGCGAGACGc--CGU- -5'
29779 3' -56.2 NC_006273.1 + 22260 0.66 0.95535
Target:  5'- gGCgagCG-ACGCgGCUcCGCcgucggugcgcucaUCUGCGGCAg -3'
miRNA:   3'- -CGa--GCaUGUGaCGA-GCG--------------AGACGCCGU- -5'
29779 3' -56.2 NC_006273.1 + 40698 0.67 0.902195
Target:  5'- uGCggCGUGCugUGUccggCGCUUUGUGcGCAc -3'
miRNA:   3'- -CGa-GCAUGugACGa---GCGAGACGC-CGU- -5'
29779 3' -56.2 NC_006273.1 + 46160 0.66 0.944371
Target:  5'- cGCUgCGacACGCUaGCgacCGCcCUGCGGCAu -3'
miRNA:   3'- -CGA-GCa-UGUGA-CGa--GCGaGACGCCGU- -5'
29779 3' -56.2 NC_006273.1 + 48963 0.66 0.948625
Target:  5'- gGCUaGUACGuaaaguCUGCa-GCUgCUGCGGCAa -3'
miRNA:   3'- -CGAgCAUGU------GACGagCGA-GACGCCGU- -5'
29779 3' -56.2 NC_006273.1 + 50097 0.66 0.948625
Target:  5'- cGCUCGccgACGCUGCgcuucuccaGCcaccgCUGCGGUc -3'
miRNA:   3'- -CGAGCa--UGUGACGag-------CGa----GACGCCGu -5'
29779 3' -56.2 NC_006273.1 + 64850 0.66 0.948625
Target:  5'- --cCGUGCACg---CGCUCUcGCGGCc -3'
miRNA:   3'- cgaGCAUGUGacgaGCGAGA-CGCCGu -5'
29779 3' -56.2 NC_006273.1 + 65799 0.69 0.829972
Target:  5'- cGCUCGUgu-CUGCgUCGCccCUGCGGUc -3'
miRNA:   3'- -CGAGCAuguGACG-AGCGa-GACGCCGu -5'
29779 3' -56.2 NC_006273.1 + 66987 0.67 0.90826
Target:  5'- --aCGaACACUGCUUGCUCaaCGGUAg -3'
miRNA:   3'- cgaGCaUGUGACGAGCGAGacGCCGU- -5'
29779 3' -56.2 NC_006273.1 + 68356 0.68 0.889402
Target:  5'- gGC-CGUGCAgCUGCaaaucagCGcCUCgUGCGGCAa -3'
miRNA:   3'- -CGaGCAUGU-GACGa------GC-GAG-ACGCCGU- -5'
29779 3' -56.2 NC_006273.1 + 72818 0.66 0.948625
Target:  5'- cGCUCGc---CUGCUCGCUCgUGC-GCu -3'
miRNA:   3'- -CGAGCauguGACGAGCGAG-ACGcCGu -5'
29779 3' -56.2 NC_006273.1 + 78306 0.66 0.952658
Target:  5'- uGCUCGcGCACguaGCUCGgaUCUuCGGCu -3'
miRNA:   3'- -CGAGCaUGUGa--CGAGCg-AGAcGCCGu -5'
29779 3' -56.2 NC_006273.1 + 87727 0.68 0.895908
Target:  5'- uGCUguUGuUGCGaUGCUCGUggCUGCGGCGg -3'
miRNA:   3'- -CGA--GC-AUGUgACGAGCGa-GACGCCGU- -5'
29779 3' -56.2 NC_006273.1 + 92583 0.66 0.937098
Target:  5'- cGCcCGUGCccaccagcgacggcgGCUGCUguUGCUCgccaGCGGCGc -3'
miRNA:   3'- -CGaGCAUG---------------UGACGA--GCGAGa---CGCCGU- -5'
29779 3' -56.2 NC_006273.1 + 96013 0.68 0.875745
Target:  5'- aCUCGUGCAacgaggccuucCUGC-CGCUCauggccuucUGCGGCc -3'
miRNA:   3'- cGAGCAUGU-----------GACGaGCGAG---------ACGCCGu -5'
29779 3' -56.2 NC_006273.1 + 98185 0.74 0.582876
Target:  5'- cGCUCGcgcugGCgACgaGCUCGCUgaGCGGCAg -3'
miRNA:   3'- -CGAGCa----UG-UGa-CGAGCGAgaCGCCGU- -5'
29779 3' -56.2 NC_006273.1 + 116963 0.71 0.750308
Target:  5'- gGCUaCGUGCACaGUggcaGCgCUGCGGCAg -3'
miRNA:   3'- -CGA-GCAUGUGaCGag--CGaGACGCCGU- -5'
29779 3' -56.2 NC_006273.1 + 124443 0.7 0.787068
Target:  5'- cGCgggCGUGCGCgGCUCGCcgacgCUGCGcucGCGg -3'
miRNA:   3'- -CGa--GCAUGUGaCGAGCGa----GACGC---CGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.