miRNA display CGI


Results 21 - 30 of 30 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29779 3' -56.2 NC_006273.1 + 133980 0.66 0.9561
Target:  5'- cGCggaugagCGUGCugcuCUGCaCGCUCUGUcggaugaGGCAg -3'
miRNA:   3'- -CGa------GCAUGu---GACGaGCGAGACG-------CCGU- -5'
29779 3' -56.2 NC_006273.1 + 143450 0.69 0.821705
Target:  5'- aGCUCacGCACUGCUCcgacgccugucuGCUCauucugGCGGCGc -3'
miRNA:   3'- -CGAGcaUGUGACGAG------------CGAGa-----CGCCGU- -5'
29779 3' -56.2 NC_006273.1 + 144453 0.67 0.90826
Target:  5'- gGCUCGcacUACACggGCUCGCgcgcCGGCGu -3'
miRNA:   3'- -CGAGC---AUGUGa-CGAGCGagacGCCGU- -5'
29779 3' -56.2 NC_006273.1 + 162035 0.66 0.952264
Target:  5'- cGCUgGUGCuggcucuucugcuGgUGCUgGCUCUGCuguGGCGc -3'
miRNA:   3'- -CGAgCAUG-------------UgACGAgCGAGACG---CCGU- -5'
29779 3' -56.2 NC_006273.1 + 163331 1.11 0.003155
Target:  5'- aGCUCGUACACUGCUCGCUCUGCGGCAg -3'
miRNA:   3'- -CGAGCAUGUGACGAGCGAGACGCCGU- -5'
29779 3' -56.2 NC_006273.1 + 173513 0.7 0.804684
Target:  5'- uGUUCGUGCaACUGCUCG----GCGGCGu -3'
miRNA:   3'- -CGAGCAUG-UGACGAGCgagaCGCCGU- -5'
29779 3' -56.2 NC_006273.1 + 189833 0.66 0.939893
Target:  5'- cCUCGgcCACgccgGgUgGCaUCUGCGGCAu -3'
miRNA:   3'- cGAGCauGUGa---CgAgCG-AGACGCCGU- -5'
29779 3' -56.2 NC_006273.1 + 193152 0.67 0.9251
Target:  5'- --gUGUGCGgcCUGCUgUGCUCUGCGGa- -3'
miRNA:   3'- cgaGCAUGU--GACGA-GCGAGACGCCgu -5'
29779 3' -56.2 NC_006273.1 + 196972 0.67 0.9251
Target:  5'- cGCUCGU-CGCUGUUgcCGCcaccgCaGCGGCGg -3'
miRNA:   3'- -CGAGCAuGUGACGA--GCGa----GaCGCCGU- -5'
29779 3' -56.2 NC_006273.1 + 223602 0.67 0.90826
Target:  5'- gGCUUGUuCACgucGUUCGUgggCUGCGGUu -3'
miRNA:   3'- -CGAGCAuGUGa--CGAGCGa--GACGCCGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.