Results 1 - 20 of 30 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29779 | 3' | -56.2 | NC_006273.1 | + | 116963 | 0.71 | 0.750308 |
Target: 5'- gGCUaCGUGCACaGUggcaGCgCUGCGGCAg -3' miRNA: 3'- -CGA-GCAUGUGaCGag--CGaGACGCCGU- -5' |
|||||||
29779 | 3' | -56.2 | NC_006273.1 | + | 133980 | 0.66 | 0.9561 |
Target: 5'- cGCggaugagCGUGCugcuCUGCaCGCUCUGUcggaugaGGCAg -3' miRNA: 3'- -CGa------GCAUGu---GACGaGCGAGACG-------CCGU- -5' |
|||||||
29779 | 3' | -56.2 | NC_006273.1 | + | 22260 | 0.66 | 0.95535 |
Target: 5'- gGCgagCG-ACGCgGCUcCGCcgucggugcgcucaUCUGCGGCAg -3' miRNA: 3'- -CGa--GCaUGUGaCGA-GCG--------------AGACGCCGU- -5' |
|||||||
29779 | 3' | -56.2 | NC_006273.1 | + | 78306 | 0.66 | 0.952658 |
Target: 5'- uGCUCGcGCACguaGCUCGgaUCUuCGGCu -3' miRNA: 3'- -CGAGCaUGUGa--CGAGCg-AGAcGCCGu -5' |
|||||||
29779 | 3' | -56.2 | NC_006273.1 | + | 9714 | 0.66 | 0.952658 |
Target: 5'- uGUUgGUGCACUGgUCaucuGCuuUCUGCGGUc -3' miRNA: 3'- -CGAgCAUGUGACgAG----CG--AGACGCCGu -5' |
|||||||
29779 | 3' | -56.2 | NC_006273.1 | + | 64850 | 0.66 | 0.948625 |
Target: 5'- --cCGUGCACg---CGCUCUcGCGGCc -3' miRNA: 3'- cgaGCAUGUGacgaGCGAGA-CGCCGu -5' |
|||||||
29779 | 3' | -56.2 | NC_006273.1 | + | 50097 | 0.66 | 0.948625 |
Target: 5'- cGCUCGccgACGCUGCgcuucuccaGCcaccgCUGCGGUc -3' miRNA: 3'- -CGAGCa--UGUGACGag-------CGa----GACGCCGu -5' |
|||||||
29779 | 3' | -56.2 | NC_006273.1 | + | 46160 | 0.66 | 0.944371 |
Target: 5'- cGCUgCGacACGCUaGCgacCGCcCUGCGGCAu -3' miRNA: 3'- -CGA-GCa-UGUGA-CGa--GCGaGACGCCGU- -5' |
|||||||
29779 | 3' | -56.2 | NC_006273.1 | + | 189833 | 0.66 | 0.939893 |
Target: 5'- cCUCGgcCACgccgGgUgGCaUCUGCGGCAu -3' miRNA: 3'- cGAGCauGUGa---CgAgCG-AGACGCCGU- -5' |
|||||||
29779 | 3' | -56.2 | NC_006273.1 | + | 193152 | 0.67 | 0.9251 |
Target: 5'- --gUGUGCGgcCUGCUgUGCUCUGCGGa- -3' miRNA: 3'- cgaGCAUGU--GACGA-GCGAGACGCCgu -5' |
|||||||
29779 | 3' | -56.2 | NC_006273.1 | + | 124443 | 0.7 | 0.787068 |
Target: 5'- cGCgggCGUGCGCgGCUCGCcgacgCUGCGcucGCGg -3' miRNA: 3'- -CGa--GCAUGUGaCGAGCGa----GACGC---CGU- -5' |
|||||||
29779 | 3' | -56.2 | NC_006273.1 | + | 143450 | 0.69 | 0.821705 |
Target: 5'- aGCUCacGCACUGCUCcgacgccugucuGCUCauucugGCGGCGc -3' miRNA: 3'- -CGAGcaUGUGACGAG------------CGAGa-----CGCCGU- -5' |
|||||||
29779 | 3' | -56.2 | NC_006273.1 | + | 65799 | 0.69 | 0.829972 |
Target: 5'- cGCUCGUgu-CUGCgUCGCccCUGCGGUc -3' miRNA: 3'- -CGAGCAuguGACG-AGCGa-GACGCCGu -5' |
|||||||
29779 | 3' | -56.2 | NC_006273.1 | + | 87727 | 0.68 | 0.895908 |
Target: 5'- uGCUguUGuUGCGaUGCUCGUggCUGCGGCGg -3' miRNA: 3'- -CGA--GC-AUGUgACGAGCGa-GACGCCGU- -5' |
|||||||
29779 | 3' | -56.2 | NC_006273.1 | + | 760 | 0.67 | 0.902195 |
Target: 5'- uGCggCGUGCugUGUccggCGCUUUGUGcGCAc -3' miRNA: 3'- -CGa-GCAUGugACGa---GCGAGACGC-CGU- -5' |
|||||||
29779 | 3' | -56.2 | NC_006273.1 | + | 144453 | 0.67 | 0.90826 |
Target: 5'- gGCUCGcacUACACggGCUCGCgcgcCGGCGu -3' miRNA: 3'- -CGAGC---AUGUGa-CGAGCGagacGCCGU- -5' |
|||||||
29779 | 3' | -56.2 | NC_006273.1 | + | 223602 | 0.67 | 0.90826 |
Target: 5'- gGCUUGUuCACgucGUUCGUgggCUGCGGUu -3' miRNA: 3'- -CGAGCAuGUGa--CGAGCGa--GACGCCGu -5' |
|||||||
29779 | 3' | -56.2 | NC_006273.1 | + | 162035 | 0.66 | 0.952264 |
Target: 5'- cGCUgGUGCuggcucuucugcuGgUGCUgGCUCUGCuguGGCGc -3' miRNA: 3'- -CGAgCAUG-------------UgACGAgCGAGACG---CCGU- -5' |
|||||||
29779 | 3' | -56.2 | NC_006273.1 | + | 98185 | 0.74 | 0.582876 |
Target: 5'- cGCUCGcgcugGCgACgaGCUCGCUgaGCGGCAg -3' miRNA: 3'- -CGAGCa----UG-UGa-CGAGCGAgaCGCCGU- -5' |
|||||||
29779 | 3' | -56.2 | NC_006273.1 | + | 173513 | 0.7 | 0.804684 |
Target: 5'- uGUUCGUGCaACUGCUCG----GCGGCGu -3' miRNA: 3'- -CGAGCAUG-UGACGAGCgagaCGCCGU- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home