miRNA display CGI


Results 21 - 30 of 30 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29779 3' -56.2 NC_006273.1 + 196972 0.67 0.9251
Target:  5'- cGCUCGU-CGCUGUUgcCGCcaccgCaGCGGCGg -3'
miRNA:   3'- -CGAGCAuGUGACGA--GCGa----GaCGCCGU- -5'
29779 3' -56.2 NC_006273.1 + 66987 0.67 0.90826
Target:  5'- --aCGaACACUGCUUGCUCaaCGGUAg -3'
miRNA:   3'- cgaGCaUGUGACGAGCGAGacGCCGU- -5'
29779 3' -56.2 NC_006273.1 + 40698 0.67 0.902195
Target:  5'- uGCggCGUGCugUGUccggCGCUUUGUGcGCAc -3'
miRNA:   3'- -CGa-GCAUGugACGa---GCGAGACGC-CGU- -5'
29779 3' -56.2 NC_006273.1 + 21005 0.68 0.895908
Target:  5'- uUUCGUuccuCAC-GCUCGCUCUGCuaaGCGa -3'
miRNA:   3'- cGAGCAu---GUGaCGAGCGAGACGc--CGU- -5'
29779 3' -56.2 NC_006273.1 + 68356 0.68 0.889402
Target:  5'- gGC-CGUGCAgCUGCaaaucagCGcCUCgUGCGGCAa -3'
miRNA:   3'- -CGaGCAUGU-GACGa------GC-GAG-ACGCCGU- -5'
29779 3' -56.2 NC_006273.1 + 96013 0.68 0.875745
Target:  5'- aCUCGUGCAacgaggccuucCUGC-CGCUCauggccuucUGCGGCc -3'
miRNA:   3'- cGAGCAUGU-----------GACGaGCGAG---------ACGCCGu -5'
29779 3' -56.2 NC_006273.1 + 173513 0.7 0.804684
Target:  5'- uGUUCGUGCaACUGCUCG----GCGGCGu -3'
miRNA:   3'- -CGAGCAUG-UGACGAGCgagaCGCCGU- -5'
29779 3' -56.2 NC_006273.1 + 98185 0.74 0.582876
Target:  5'- cGCUCGcgcugGCgACgaGCUCGCUgaGCGGCAg -3'
miRNA:   3'- -CGAGCa----UG-UGa-CGAGCGAgaCGCCGU- -5'
29779 3' -56.2 NC_006273.1 + 163331 1.11 0.003155
Target:  5'- aGCUCGUACACUGCUCGCUCUGCGGCAg -3'
miRNA:   3'- -CGAGCAUGUGACGAGCGAGACGCCGU- -5'
29779 3' -56.2 NC_006273.1 + 162035 0.66 0.952264
Target:  5'- cGCUgGUGCuggcucuucugcuGgUGCUgGCUCUGCuguGGCGc -3'
miRNA:   3'- -CGAgCAUG-------------UgACGAgCGAGACG---CCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.