miRNA display CGI


Results 1 - 20 of 57 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29779 5' -58.1 NC_006273.1 + 80947 0.66 0.914518
Target:  5'- gGGcUGCGGCgagucgcccAGCGgGUCgGCcAGCUCGc -3'
miRNA:   3'- -UC-ACGCCG---------UCGCgCAGaUGcUCGAGC- -5'
29779 5' -58.1 NC_006273.1 + 187945 0.66 0.914518
Target:  5'- --gGCaGCAGCGCGUUcgacgacgucgUACGAGUcgCGg -3'
miRNA:   3'- ucaCGcCGUCGCGCAG-----------AUGCUCGa-GC- -5'
29779 5' -58.1 NC_006273.1 + 64266 0.66 0.912823
Target:  5'- -uUGCGGCGGCggccgaagcggaugGCGcCUuacGCGAGUUCu -3'
miRNA:   3'- ucACGCCGUCG--------------CGCaGA---UGCUCGAGc -5'
29779 5' -58.1 NC_006273.1 + 32765 0.66 0.908794
Target:  5'- -cUGCGGCAGCGaGUCgGCG-GCgCGc -3'
miRNA:   3'- ucACGCCGUCGCgCAGaUGCuCGaGC- -5'
29779 5' -58.1 NC_006273.1 + 73659 0.66 0.908794
Target:  5'- --cGCGGCGGCGCaaagcGCGAGCg-- -3'
miRNA:   3'- ucaCGCCGUCGCGcaga-UGCUCGagc -5'
29779 5' -58.1 NC_006273.1 + 233867 0.66 0.908794
Target:  5'- uGUGCGcaaGCAGCGUaGUCcgcggcguCGAGCUCc -3'
miRNA:   3'- uCACGC---CGUCGCG-CAGau------GCUCGAGc -5'
29779 5' -58.1 NC_006273.1 + 33344 0.66 0.908794
Target:  5'- -cUGCGGCAGcCGCGUgcgaucCUGCG-GCgCGu -3'
miRNA:   3'- ucACGCCGUC-GCGCA------GAUGCuCGaGC- -5'
29779 5' -58.1 NC_006273.1 + 16937 0.66 0.908209
Target:  5'- uGG-GCgaGGCGGCGCGUCUucacuuuACcAGUUCGa -3'
miRNA:   3'- -UCaCG--CCGUCGCGCAGA-------UGcUCGAGC- -5'
29779 5' -58.1 NC_006273.1 + 51592 0.66 0.908209
Target:  5'- uGGcgGCGGCAGCgGgGUCUucuuccgacacggGCGAcggcagGCUCGg -3'
miRNA:   3'- -UCa-CGCCGUCG-CgCAGA-------------UGCU------CGAGC- -5'
29779 5' -58.1 NC_006273.1 + 149505 0.66 0.902853
Target:  5'- -uUGCGGUGGCGCuuGUUgcGCGGGCUgCGu -3'
miRNA:   3'- ucACGCCGUCGCG--CAGa-UGCUCGA-GC- -5'
29779 5' -58.1 NC_006273.1 + 184115 0.66 0.902853
Target:  5'- uAGUGCcGCGGUuuuuugucGCGUCcACGGGCUgCGc -3'
miRNA:   3'- -UCACGcCGUCG--------CGCAGaUGCUCGA-GC- -5'
29779 5' -58.1 NC_006273.1 + 204896 0.66 0.902853
Target:  5'- --cGUGGCGcuGCGCGcCcGCGuGCUCGu -3'
miRNA:   3'- ucaCGCCGU--CGCGCaGaUGCuCGAGC- -5'
29779 5' -58.1 NC_006273.1 + 10380 0.66 0.896696
Target:  5'- uGUGCGGCGGaCGCGUgaGaGAGgaUCGa -3'
miRNA:   3'- uCACGCCGUC-GCGCAgaUgCUCg-AGC- -5'
29779 5' -58.1 NC_006273.1 + 117926 0.66 0.890328
Target:  5'- --cGCGGCGGCGuCGUCguCGucCUCGg -3'
miRNA:   3'- ucaCGCCGUCGC-GCAGauGCucGAGC- -5'
29779 5' -58.1 NC_006273.1 + 72053 0.66 0.890328
Target:  5'- -cUGCcGCAGagcgaGCaGUgUACGAGCUCGg -3'
miRNA:   3'- ucACGcCGUCg----CG-CAgAUGCUCGAGC- -5'
29779 5' -58.1 NC_006273.1 + 163075 0.66 0.890328
Target:  5'- gAG-GCGGCGGCGaCGgcggcggCUGCGGGgUUa -3'
miRNA:   3'- -UCaCGCCGUCGC-GCa------GAUGCUCgAGc -5'
29779 5' -58.1 NC_006273.1 + 38653 0.66 0.890328
Target:  5'- gGGUGCGGCgccgacgcgaacGGCuCGUaCUGCGccAGCUCc -3'
miRNA:   3'- -UCACGCCG------------UCGcGCA-GAUGC--UCGAGc -5'
29779 5' -58.1 NC_006273.1 + 233545 0.66 0.890328
Target:  5'- gGGUGCGGCgccgacgcgaacGGCuCGUaCUGCGccAGCUCc -3'
miRNA:   3'- -UCACGCCG------------UCGcGCA-GAUGC--UCGAGc -5'
29779 5' -58.1 NC_006273.1 + 182829 0.66 0.88375
Target:  5'- -cUGUGGCAaCgGCGgcgACGAGCUCGg -3'
miRNA:   3'- ucACGCCGUcG-CGCagaUGCUCGAGC- -5'
29779 5' -58.1 NC_006273.1 + 71982 0.67 0.876967
Target:  5'- --cGCGuacGCAGCgcuguccaaagaGCGUCUcggagACGAGCUCGu -3'
miRNA:   3'- ucaCGC---CGUCG------------CGCAGA-----UGCUCGAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.