Results 1 - 20 of 135 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29791 | 3' | -64.6 | NC_006273.1 | + | 43588 | 0.66 | 0.657355 |
Target: 5'- gGCaaGUGCCgcGGCgCGuGuCCGGGUGGCu -3' miRNA: 3'- aUGagCGCGG--UCG-GC-CuGGCCCGCCG- -5' |
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29791 | 3' | -64.6 | NC_006273.1 | + | 38755 | 0.66 | 0.657355 |
Target: 5'- --gUCGUGCCGGCCcaccGCCGGcGCaGCu -3' miRNA: 3'- augAGCGCGGUCGGcc--UGGCC-CGcCG- -5' |
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29791 | 3' | -64.6 | NC_006273.1 | + | 145600 | 0.66 | 0.657355 |
Target: 5'- aGCggGgGCCcgAGCgaCGGuCUGGGCGGCg -3' miRNA: 3'- aUGagCgCGG--UCG--GCCuGGCCCGCCG- -5' |
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29791 | 3' | -64.6 | NC_006273.1 | + | 90026 | 0.66 | 0.657355 |
Target: 5'- -cCUCGCGCUcgcggaagauGGCCGaGACCaGGUagacgguaGGCa -3' miRNA: 3'- auGAGCGCGG----------UCGGC-CUGGcCCG--------CCG- -5' |
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29791 | 3' | -64.6 | NC_006273.1 | + | 85997 | 0.66 | 0.657355 |
Target: 5'- cGCUCGuCGCCccagaccaacAGCac-GCCGGGCGcGCu -3' miRNA: 3'- aUGAGC-GCGG----------UCGgccUGGCCCGC-CG- -5' |
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29791 | 3' | -64.6 | NC_006273.1 | + | 140875 | 0.66 | 0.657355 |
Target: 5'- cGCUCGgGUCcccCCGGGCCGcGGaCGGg -3' miRNA: 3'- aUGAGCgCGGuc-GGCCUGGC-CC-GCCg -5' |
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29791 | 3' | -64.6 | NC_006273.1 | + | 233647 | 0.66 | 0.657355 |
Target: 5'- --gUCGUGCCGGCCcaccGCCGGcGCaGCu -3' miRNA: 3'- augAGCGCGGUCGGcc--UGGCC-CGcCG- -5' |
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29791 | 3' | -64.6 | NC_006273.1 | + | 151238 | 0.66 | 0.657355 |
Target: 5'- gGC-CGCGCCGcuccucgucuGCCGuGAUcaagCGGcGCGGCg -3' miRNA: 3'- aUGaGCGCGGU----------CGGC-CUG----GCC-CGCCG- -5' |
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29791 | 3' | -64.6 | NC_006273.1 | + | 104121 | 0.66 | 0.657355 |
Target: 5'- cGCggCGCGCgCAcGCCGaGACCcgacGCGGCg -3' miRNA: 3'- aUGa-GCGCG-GU-CGGC-CUGGcc--CGCCG- -5' |
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29791 | 3' | -64.6 | NC_006273.1 | + | 189875 | 0.66 | 0.647955 |
Target: 5'- ---aCGCGUCGGgCGGaccGCCGGGCaucgccgucGGCu -3' miRNA: 3'- augaGCGCGGUCgGCC---UGGCCCG---------CCG- -5' |
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29791 | 3' | -64.6 | NC_006273.1 | + | 171565 | 0.66 | 0.645132 |
Target: 5'- cACUCGCgGCguGCCGcuGCCGGuggaaggggaagacGCGGUa -3' miRNA: 3'- aUGAGCG-CGguCGGCc-UGGCC--------------CGCCG- -5' |
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29791 | 3' | -64.6 | NC_006273.1 | + | 14351 | 0.66 | 0.645132 |
Target: 5'- cAgUUGUGCC-GCCGGAgcuccccgcgcugcCUGuGGCGGCu -3' miRNA: 3'- aUgAGCGCGGuCGGCCU--------------GGC-CCGCCG- -5' |
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29791 | 3' | -64.6 | NC_006273.1 | + | 141142 | 0.66 | 0.642309 |
Target: 5'- gAC-CGCaGCaCGGCCGGaacccuGCCgcggacugcgccgggGGGCGGCg -3' miRNA: 3'- aUGaGCG-CG-GUCGGCC------UGG---------------CCCGCCG- -5' |
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29791 | 3' | -64.6 | NC_006273.1 | + | 38195 | 0.66 | 0.638543 |
Target: 5'- aGCcCGCGCCgcGGCCGcucauCCGGaGaCGGCg -3' miRNA: 3'- aUGaGCGCGG--UCGGCcu---GGCC-C-GCCG- -5' |
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29791 | 3' | -64.6 | NC_006273.1 | + | 201963 | 0.66 | 0.638543 |
Target: 5'- gGCUgucgCGCGCC-GCCGacgcCCGaGGCGGUg -3' miRNA: 3'- aUGA----GCGCGGuCGGCcu--GGC-CCGCCG- -5' |
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29791 | 3' | -64.6 | NC_006273.1 | + | 80374 | 0.66 | 0.638543 |
Target: 5'- cGCUCcaaGCGggAGCgGcGGCCGuGGCGGCg -3' miRNA: 3'- aUGAG---CGCggUCGgC-CUGGC-CCGCCG- -5' |
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29791 | 3' | -64.6 | NC_006273.1 | + | 63166 | 0.66 | 0.638543 |
Target: 5'- -cCUUGCGUCcgucucgcGGCgCGG-CCGGcGCGGCc -3' miRNA: 3'- auGAGCGCGG--------UCG-GCCuGGCC-CGCCG- -5' |
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29791 | 3' | -64.6 | NC_006273.1 | + | 192662 | 0.66 | 0.638543 |
Target: 5'- gGCUCGuCGCCguguGGCgCGGcCUGGcCGGCu -3' miRNA: 3'- aUGAGC-GCGG----UCG-GCCuGGCCcGCCG- -5' |
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29791 | 3' | -64.6 | NC_006273.1 | + | 162373 | 0.66 | 0.638543 |
Target: 5'- gGCg-GCGCUAGUgGuGGCgGuGGCGGCg -3' miRNA: 3'- aUGagCGCGGUCGgC-CUGgC-CCGCCG- -5' |
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29791 | 3' | -64.6 | NC_006273.1 | + | 37993 | 0.66 | 0.629128 |
Target: 5'- gGCUCGCGCgcccaCAGCgCGGcGCgCGGGUgcaGGUg -3' miRNA: 3'- aUGAGCGCG-----GUCG-GCC-UG-GCCCG---CCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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