miRNA display CGI


Results 1 - 20 of 135 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29791 3' -64.6 NC_006273.1 + 43588 0.66 0.657355
Target:  5'- gGCaaGUGCCgcGGCgCGuGuCCGGGUGGCu -3'
miRNA:   3'- aUGagCGCGG--UCG-GC-CuGGCCCGCCG- -5'
29791 3' -64.6 NC_006273.1 + 38755 0.66 0.657355
Target:  5'- --gUCGUGCCGGCCcaccGCCGGcGCaGCu -3'
miRNA:   3'- augAGCGCGGUCGGcc--UGGCC-CGcCG- -5'
29791 3' -64.6 NC_006273.1 + 145600 0.66 0.657355
Target:  5'- aGCggGgGCCcgAGCgaCGGuCUGGGCGGCg -3'
miRNA:   3'- aUGagCgCGG--UCG--GCCuGGCCCGCCG- -5'
29791 3' -64.6 NC_006273.1 + 90026 0.66 0.657355
Target:  5'- -cCUCGCGCUcgcggaagauGGCCGaGACCaGGUagacgguaGGCa -3'
miRNA:   3'- auGAGCGCGG----------UCGGC-CUGGcCCG--------CCG- -5'
29791 3' -64.6 NC_006273.1 + 85997 0.66 0.657355
Target:  5'- cGCUCGuCGCCccagaccaacAGCac-GCCGGGCGcGCu -3'
miRNA:   3'- aUGAGC-GCGG----------UCGgccUGGCCCGC-CG- -5'
29791 3' -64.6 NC_006273.1 + 140875 0.66 0.657355
Target:  5'- cGCUCGgGUCcccCCGGGCCGcGGaCGGg -3'
miRNA:   3'- aUGAGCgCGGuc-GGCCUGGC-CC-GCCg -5'
29791 3' -64.6 NC_006273.1 + 233647 0.66 0.657355
Target:  5'- --gUCGUGCCGGCCcaccGCCGGcGCaGCu -3'
miRNA:   3'- augAGCGCGGUCGGcc--UGGCC-CGcCG- -5'
29791 3' -64.6 NC_006273.1 + 151238 0.66 0.657355
Target:  5'- gGC-CGCGCCGcuccucgucuGCCGuGAUcaagCGGcGCGGCg -3'
miRNA:   3'- aUGaGCGCGGU----------CGGC-CUG----GCC-CGCCG- -5'
29791 3' -64.6 NC_006273.1 + 104121 0.66 0.657355
Target:  5'- cGCggCGCGCgCAcGCCGaGACCcgacGCGGCg -3'
miRNA:   3'- aUGa-GCGCG-GU-CGGC-CUGGcc--CGCCG- -5'
29791 3' -64.6 NC_006273.1 + 189875 0.66 0.647955
Target:  5'- ---aCGCGUCGGgCGGaccGCCGGGCaucgccgucGGCu -3'
miRNA:   3'- augaGCGCGGUCgGCC---UGGCCCG---------CCG- -5'
29791 3' -64.6 NC_006273.1 + 171565 0.66 0.645132
Target:  5'- cACUCGCgGCguGCCGcuGCCGGuggaaggggaagacGCGGUa -3'
miRNA:   3'- aUGAGCG-CGguCGGCc-UGGCC--------------CGCCG- -5'
29791 3' -64.6 NC_006273.1 + 14351 0.66 0.645132
Target:  5'- cAgUUGUGCC-GCCGGAgcuccccgcgcugcCUGuGGCGGCu -3'
miRNA:   3'- aUgAGCGCGGuCGGCCU--------------GGC-CCGCCG- -5'
29791 3' -64.6 NC_006273.1 + 141142 0.66 0.642309
Target:  5'- gAC-CGCaGCaCGGCCGGaacccuGCCgcggacugcgccgggGGGCGGCg -3'
miRNA:   3'- aUGaGCG-CG-GUCGGCC------UGG---------------CCCGCCG- -5'
29791 3' -64.6 NC_006273.1 + 38195 0.66 0.638543
Target:  5'- aGCcCGCGCCgcGGCCGcucauCCGGaGaCGGCg -3'
miRNA:   3'- aUGaGCGCGG--UCGGCcu---GGCC-C-GCCG- -5'
29791 3' -64.6 NC_006273.1 + 201963 0.66 0.638543
Target:  5'- gGCUgucgCGCGCC-GCCGacgcCCGaGGCGGUg -3'
miRNA:   3'- aUGA----GCGCGGuCGGCcu--GGC-CCGCCG- -5'
29791 3' -64.6 NC_006273.1 + 80374 0.66 0.638543
Target:  5'- cGCUCcaaGCGggAGCgGcGGCCGuGGCGGCg -3'
miRNA:   3'- aUGAG---CGCggUCGgC-CUGGC-CCGCCG- -5'
29791 3' -64.6 NC_006273.1 + 63166 0.66 0.638543
Target:  5'- -cCUUGCGUCcgucucgcGGCgCGG-CCGGcGCGGCc -3'
miRNA:   3'- auGAGCGCGG--------UCG-GCCuGGCC-CGCCG- -5'
29791 3' -64.6 NC_006273.1 + 192662 0.66 0.638543
Target:  5'- gGCUCGuCGCCguguGGCgCGGcCUGGcCGGCu -3'
miRNA:   3'- aUGAGC-GCGG----UCG-GCCuGGCCcGCCG- -5'
29791 3' -64.6 NC_006273.1 + 162373 0.66 0.638543
Target:  5'- gGCg-GCGCUAGUgGuGGCgGuGGCGGCg -3'
miRNA:   3'- aUGagCGCGGUCGgC-CUGgC-CCGCCG- -5'
29791 3' -64.6 NC_006273.1 + 37993 0.66 0.629128
Target:  5'- gGCUCGCGCgcccaCAGCgCGGcGCgCGGGUgcaGGUg -3'
miRNA:   3'- aUGAGCGCG-----GUCG-GCC-UG-GCCCG---CCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.