miRNA display CGI


Results 1 - 20 of 135 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29791 3' -64.6 NC_006273.1 + 216201 0.66 0.614069
Target:  5'- aAUUCGaCGCCgcauucguuguacggAGCgCGGcACaUGGGCGGCg -3'
miRNA:   3'- aUGAGC-GCGG---------------UCG-GCC-UG-GCCCGCCG- -5'
29791 3' -64.6 NC_006273.1 + 37298 0.66 0.629128
Target:  5'- -cCUUGCGaCGGCCGGACauGcCGGCa -3'
miRNA:   3'- auGAGCGCgGUCGGCCUGgcCcGCCG- -5'
29791 3' -64.6 NC_006273.1 + 192662 0.66 0.638543
Target:  5'- gGCUCGuCGCCguguGGCgCGGcCUGGcCGGCu -3'
miRNA:   3'- aUGAGC-GCGG----UCG-GCCuGGCCcGCCG- -5'
29791 3' -64.6 NC_006273.1 + 38195 0.66 0.638543
Target:  5'- aGCcCGCGCCgcGGCCGcucauCCGGaGaCGGCg -3'
miRNA:   3'- aUGaGCGCGG--UCGGCcu---GGCC-C-GCCG- -5'
29791 3' -64.6 NC_006273.1 + 162373 0.66 0.638543
Target:  5'- gGCg-GCGCUAGUgGuGGCgGuGGCGGCg -3'
miRNA:   3'- aUGagCGCGGUCGgC-CUGgC-CCGCCG- -5'
29791 3' -64.6 NC_006273.1 + 82131 0.66 0.610308
Target:  5'- cUGCUCuGCGuCCAGaCGGGCCaGGGCcagaaGCa -3'
miRNA:   3'- -AUGAG-CGC-GGUCgGCCUGG-CCCGc----CG- -5'
29791 3' -64.6 NC_006273.1 + 171565 0.66 0.645132
Target:  5'- cACUCGCgGCguGCCGcuGCCGGuggaaggggaagacGCGGUa -3'
miRNA:   3'- aUGAGCG-CGguCGGCc-UGGCC--------------CGCCG- -5'
29791 3' -64.6 NC_006273.1 + 189875 0.66 0.647955
Target:  5'- ---aCGCGUCGGgCGGaccGCCGGGCaucgccgucGGCu -3'
miRNA:   3'- augaGCGCGGUCgGCC---UGGCCCG---------CCG- -5'
29791 3' -64.6 NC_006273.1 + 151238 0.66 0.657355
Target:  5'- gGC-CGCGCCGcuccucgucuGCCGuGAUcaagCGGcGCGGCg -3'
miRNA:   3'- aUGaGCGCGGU----------CGGC-CUG----GCC-CGCCG- -5'
29791 3' -64.6 NC_006273.1 + 171496 0.66 0.629128
Target:  5'- --aUCGgGCCGGCCcaaaGGAUCGGGaagaGGa -3'
miRNA:   3'- augAGCgCGGUCGG----CCUGGCCCg---CCg -5'
29791 3' -64.6 NC_006273.1 + 73745 0.66 0.629128
Target:  5'- gGCg-GCGgCGGCCGaGGcCCGGcaGCGGCg -3'
miRNA:   3'- aUGagCGCgGUCGGC-CU-GGCC--CGCCG- -5'
29791 3' -64.6 NC_006273.1 + 63166 0.66 0.638543
Target:  5'- -cCUUGCGUCcgucucgcGGCgCGG-CCGGcGCGGCc -3'
miRNA:   3'- auGAGCGCGG--------UCG-GCCuGGCC-CGCCG- -5'
29791 3' -64.6 NC_006273.1 + 232886 0.66 0.629128
Target:  5'- gGCUCGCGCgcccaCAGCgCGGcGCgCGGGUgcaGGUg -3'
miRNA:   3'- aUGAGCGCG-----GUCG-GCC-UG-GCCCG---CCG- -5'
29791 3' -64.6 NC_006273.1 + 233647 0.66 0.657355
Target:  5'- --gUCGUGCCGGCCcaccGCCGGcGCaGCu -3'
miRNA:   3'- augAGCGCGGUCGGcc--UGGCC-CGcCG- -5'
29791 3' -64.6 NC_006273.1 + 196972 0.66 0.610308
Target:  5'- cGCUCGuCGCUguuGCCGccACCGcagcGGCGGCg -3'
miRNA:   3'- aUGAGC-GCGGu--CGGCc-UGGC----CCGCCG- -5'
29791 3' -64.6 NC_006273.1 + 143343 0.66 0.629128
Target:  5'- -cCUCauGCGgCuGuuGGACCGGcGCGGUc -3'
miRNA:   3'- auGAG--CGCgGuCggCCUGGCC-CGCCG- -5'
29791 3' -64.6 NC_006273.1 + 61564 0.66 0.629128
Target:  5'- aUugUCcuCGUCGGCCGGGUCGcGCGGCc -3'
miRNA:   3'- -AugAGc-GCGGUCGGCCUGGCcCGCCG- -5'
29791 3' -64.6 NC_006273.1 + 113501 0.66 0.629128
Target:  5'- aUGC-CGUaGCCGGCggCGGGuugcCCGGGgGGCg -3'
miRNA:   3'- -AUGaGCG-CGGUCG--GCCU----GGCCCgCCG- -5'
29791 3' -64.6 NC_006273.1 + 78710 0.66 0.619714
Target:  5'- --aUCGuCGCgGGCCuGcACCaGGCGGCg -3'
miRNA:   3'- augAGC-GCGgUCGGcC-UGGcCCGCCG- -5'
29791 3' -64.6 NC_006273.1 + 102838 0.66 0.618773
Target:  5'- ---gCGCGCCGGCCGcGuccaCGGGCacgcuguugggugGGCa -3'
miRNA:   3'- augaGCGCGGUCGGC-Cug--GCCCG-------------CCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.