miRNA display CGI


Results 61 - 80 of 135 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29791 3' -64.6 NC_006273.1 + 45888 0.67 0.554358
Target:  5'- cACagCGCGgCGGCCGGGCCGccgaGGCc -3'
miRNA:   3'- aUGa-GCGCgGUCGGCCUGGCccg-CCG- -5'
29791 3' -64.6 NC_006273.1 + 152600 0.67 0.554358
Target:  5'- ---cUGCGCCAGCgGGugUGucucGGUGGCc -3'
miRNA:   3'- augaGCGCGGUCGgCCugGC----CCGCCG- -5'
29791 3' -64.6 NC_006273.1 + 137444 0.67 0.581264
Target:  5'- gUGCUCuacgucaCGCCAGacuuggacuuuuaCUGGgugcuGCCGGGCGGCu -3'
miRNA:   3'- -AUGAGc------GCGGUC-------------GGCC-----UGGCCCGCCG- -5'
29791 3' -64.6 NC_006273.1 + 192533 0.67 0.57288
Target:  5'- -uUUCGCGuCCAGUCGGACgugugaccguUGGGCaacggaacGGCg -3'
miRNA:   3'- auGAGCGC-GGUCGGCCUG----------GCCCG--------CCG- -5'
29791 3' -64.6 NC_006273.1 + 118159 0.68 0.517891
Target:  5'- aACgCGCGCCccAGCC--GCCGGcGUGGCg -3'
miRNA:   3'- aUGaGCGCGG--UCGGccUGGCC-CGCCG- -5'
29791 3' -64.6 NC_006273.1 + 83397 0.68 0.526924
Target:  5'- cUGC-CGcCGCCAcCCGG-CCcGGCGGCg -3'
miRNA:   3'- -AUGaGC-GCGGUcGGCCuGGcCCGCCG- -5'
29791 3' -64.6 NC_006273.1 + 158234 0.68 0.536016
Target:  5'- gGCgCGCGUCGGCCGGcgacGGCGGUu -3'
miRNA:   3'- aUGaGCGCGGUCGGCCuggcCCGCCG- -5'
29791 3' -64.6 NC_006273.1 + 174123 0.68 0.49118
Target:  5'- cGCgCGCGCCgcgcugcaguGGCUGGACCuGGGCccGCa -3'
miRNA:   3'- aUGaGCGCGG----------UCGGCCUGG-CCCGc-CG- -5'
29791 3' -64.6 NC_006273.1 + 30673 0.68 0.517891
Target:  5'- gGCUuccUGCgGCCGGCCgcGGugCcGGCGGCu -3'
miRNA:   3'- aUGA---GCG-CGGUCGG--CCugGcCCGCCG- -5'
29791 3' -64.6 NC_006273.1 + 158837 0.68 0.517891
Target:  5'- cACagCGCGCCAcguccucgugcGCCGcGCCGaGCGGCg -3'
miRNA:   3'- aUGa-GCGCGGU-----------CGGCcUGGCcCGCCG- -5'
29791 3' -64.6 NC_006273.1 + 124841 0.68 0.500015
Target:  5'- ---gCGCGCCAG-CGGuCCGuggaagagcGGCGGCa -3'
miRNA:   3'- augaGCGCGGUCgGCCuGGC---------CCGCCG- -5'
29791 3' -64.6 NC_006273.1 + 185275 0.68 0.517891
Target:  5'- cUGCUCcguGUGUCGGCCgcucaaacgucGGGCCGGcGUGGUg -3'
miRNA:   3'- -AUGAG---CGCGGUCGG-----------CCUGGCC-CGCCG- -5'
29791 3' -64.6 NC_006273.1 + 161673 0.68 0.536016
Target:  5'- gGgUCgGCGCuCuGCCGG-CUGcGGCGGCa -3'
miRNA:   3'- aUgAG-CGCG-GuCGGCCuGGC-CCGCCG- -5'
29791 3' -64.6 NC_006273.1 + 127234 0.68 0.536016
Target:  5'- --gUCGCGCCucgauguuGGCCGGguucaacgguuGCCGGuCGGCc -3'
miRNA:   3'- augAGCGCGG--------UCGGCC-----------UGGCCcGCCG- -5'
29791 3' -64.6 NC_006273.1 + 93929 0.68 0.536016
Target:  5'- cGCaUGCGCgGGCCaGGACCcgcGGGaGGCg -3'
miRNA:   3'- aUGaGCGCGgUCGG-CCUGG---CCCgCCG- -5'
29791 3' -64.6 NC_006273.1 + 60197 0.68 0.536016
Target:  5'- cUGgUCGCGCCGGCCGGAUUaaaGGU-GCu -3'
miRNA:   3'- -AUgAGCGCGGUCGGCCUGGc--CCGcCG- -5'
29791 3' -64.6 NC_006273.1 + 112250 0.68 0.517891
Target:  5'- gGCUgGCGCgAGgacgugcucaUGGACCGGGUGcGCa -3'
miRNA:   3'- aUGAgCGCGgUCg---------GCCUGGCCCGC-CG- -5'
29791 3' -64.6 NC_006273.1 + 95017 0.68 0.517891
Target:  5'- -uCUCGaggguccggcCGCCAGUCGuGACCGGG-GGUc -3'
miRNA:   3'- auGAGC----------GCGGUCGGC-CUGGCCCgCCG- -5'
29791 3' -64.6 NC_006273.1 + 197294 0.68 0.500015
Target:  5'- gAgUCgGCGCCcgccGCCGaGGCCGcgcGGCGGCu -3'
miRNA:   3'- aUgAG-CGCGGu---CGGC-CUGGC---CCGCCG- -5'
29791 3' -64.6 NC_006273.1 + 149691 0.68 0.500015
Target:  5'- uUGCUgCGCGCCGGUgGcGACUGGcucuCGGCc -3'
miRNA:   3'- -AUGA-GCGCGGUCGgC-CUGGCCc---GCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.