Results 81 - 100 of 135 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29791 | 3' | -64.6 | NC_006273.1 | + | 60197 | 0.68 | 0.536016 |
Target: 5'- cUGgUCGCGCCGGCCGGAUUaaaGGU-GCu -3' miRNA: 3'- -AUgAGCGCGGUCGGCCUGGc--CCGcCG- -5' |
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29791 | 3' | -64.6 | NC_006273.1 | + | 161673 | 0.68 | 0.536016 |
Target: 5'- gGgUCgGCGCuCuGCCGG-CUGcGGCGGCa -3' miRNA: 3'- aUgAG-CGCG-GuCGGCCuGGC-CCGCCG- -5' |
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29791 | 3' | -64.6 | NC_006273.1 | + | 93929 | 0.68 | 0.536016 |
Target: 5'- cGCaUGCGCgGGCCaGGACCcgcGGGaGGCg -3' miRNA: 3'- aUGaGCGCGgUCGG-CCUGG---CCCgCCG- -5' |
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29791 | 3' | -64.6 | NC_006273.1 | + | 127234 | 0.68 | 0.536016 |
Target: 5'- --gUCGCGCCucgauguuGGCCGGguucaacgguuGCCGGuCGGCc -3' miRNA: 3'- augAGCGCGG--------UCGGCC-----------UGGCCcGCCG- -5' |
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29791 | 3' | -64.6 | NC_006273.1 | + | 158234 | 0.68 | 0.536016 |
Target: 5'- gGCgCGCGUCGGCCGGcgacGGCGGUu -3' miRNA: 3'- aUGaGCGCGGUCGGCCuggcCCGCCG- -5' |
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29791 | 3' | -64.6 | NC_006273.1 | + | 95017 | 0.68 | 0.517891 |
Target: 5'- -uCUCGaggguccggcCGCCAGUCGuGACCGGG-GGUc -3' miRNA: 3'- auGAGC----------GCGGUCGGC-CUGGCCCgCCG- -5' |
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29791 | 3' | -64.6 | NC_006273.1 | + | 140182 | 0.69 | 0.482417 |
Target: 5'- ----gGCGCCGaccCCGG-CUGGGCGGCc -3' miRNA: 3'- augagCGCGGUc--GGCCuGGCCCGCCG- -5' |
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29791 | 3' | -64.6 | NC_006273.1 | + | 140776 | 0.69 | 0.482417 |
Target: 5'- ---cCGCGgCGGgUGGACCGGGaagcCGGCg -3' miRNA: 3'- augaGCGCgGUCgGCCUGGCCC----GCCG- -5' |
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29791 | 3' | -64.6 | NC_006273.1 | + | 56103 | 0.69 | 0.485913 |
Target: 5'- aUGCUCuggcgGCGCC-GCCGGauuucgucgaaacggGCCGcggaGGCGGCg -3' miRNA: 3'- -AUGAG-----CGCGGuCGGCC---------------UGGC----CCGCCG- -5' |
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29791 | 3' | -64.6 | NC_006273.1 | + | 155763 | 0.69 | 0.473731 |
Target: 5'- cUACUCcacCCuGCUGGuGCCGGGUGGCg -3' miRNA: 3'- -AUGAGcgcGGuCGGCC-UGGCCCGCCG- -5' |
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29791 | 3' | -64.6 | NC_006273.1 | + | 147557 | 0.69 | 0.473731 |
Target: 5'- gGCg-GCGUCGGCgGGAgCagcggGGGCGGCg -3' miRNA: 3'- aUGagCGCGGUCGgCCUgG-----CCCGCCG- -5' |
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29791 | 3' | -64.6 | NC_006273.1 | + | 122803 | 0.69 | 0.473731 |
Target: 5'- cACU-GCGCCAGCCaGGuagaagaagcACCG-GCGGCc -3' miRNA: 3'- aUGAgCGCGGUCGG-CC----------UGGCcCGCCG- -5' |
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29791 | 3' | -64.6 | NC_006273.1 | + | 144422 | 0.69 | 0.482417 |
Target: 5'- cGC-CGCGgCGGCggaCGGuuCGGGUGGCg -3' miRNA: 3'- aUGaGCGCgGUCG---GCCugGCCCGCCG- -5' |
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29791 | 3' | -64.6 | NC_006273.1 | + | 140757 | 0.69 | 0.473731 |
Target: 5'- gACgagCGCGUCAGCa-GGCCGGGUcgaugacgccGGCg -3' miRNA: 3'- aUGa--GCGCGGUCGgcCUGGCCCG----------CCG- -5' |
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29791 | 3' | -64.6 | NC_006273.1 | + | 75255 | 0.69 | 0.473731 |
Target: 5'- gACgaaGCGCUGGCC--GCCGcGGCGGCc -3' miRNA: 3'- aUGag-CGCGGUCGGccUGGC-CCGCCG- -5' |
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29791 | 3' | -64.6 | NC_006273.1 | + | 139311 | 0.69 | 0.465124 |
Target: 5'- aGCUCGCGCUGGCuuuccuCGGGCgaguuguaguCGcGGUGGCg -3' miRNA: 3'- aUGAGCGCGGUCG------GCCUG----------GC-CCGCCG- -5' |
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29791 | 3' | -64.6 | NC_006273.1 | + | 64831 | 0.69 | 0.465124 |
Target: 5'- gAgUCGCGguUCGGCCGGACCGuGcacgcgcucucGCGGCc -3' miRNA: 3'- aUgAGCGC--GGUCGGCCUGGC-C-----------CGCCG- -5' |
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29791 | 3' | -64.6 | NC_006273.1 | + | 128105 | 0.69 | 0.431542 |
Target: 5'- gGCUCGUG-CAGC---ACCGGGUGGCa -3' miRNA: 3'- aUGAGCGCgGUCGgccUGGCCCGCCG- -5' |
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29791 | 3' | -64.6 | NC_006273.1 | + | 215901 | 0.69 | 0.439806 |
Target: 5'- cGC-CGCGCCAGCUGG-CaCGGaGuUGGCg -3' miRNA: 3'- aUGaGCGCGGUCGGCCuG-GCC-C-GCCG- -5' |
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29791 | 3' | -64.6 | NC_006273.1 | + | 117609 | 0.69 | 0.448159 |
Target: 5'- gAgUCGCGCCgacgguaauaGGCCGGugAUgGuGGCGGCg -3' miRNA: 3'- aUgAGCGCGG----------UCGGCC--UGgC-CCGCCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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